Name: Corynebacterium lowii R-50085
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140633

Type strain:

Species: Corynebacterium lowii

Strain Designation: R-50085, TKD4

Culture col. no.: LMG 28276, CCUG 65815, DSM 107388, NML 130206

Strain history: <- LMG; LMG 28276 <- P. Vandamme, Univ. Ghent, Belgium; R-50085 <- H. Egushi, Tokushima University, Dep. of Ophtalmology, Japan; TKD4

NCBI tax ID(s): 1544413 (species)

SI-ID 402250

DSM 107388, CCUG 65815

Section

Corynebacterium lowii R-50085 is an obligate anaerobe, mesophilic, Gram-positive bacterium that was isolated from human patients with eye specimens.

Gram-positive
rod-shaped
mesophilic
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium lowii**
	Full Scientific Name (LPSN)	Corynebacterium lowii Bernard et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43066]	Gram stain	positive

[Ref.: #43066]	Cell shape	rod-shaped

[Ref.: #43066]	Motility	no

[Ref.: #43066]	Type of hemolysis	gamma
[Ref.: #43066]	Colony color	grey-white

[Ref.: #43066]	Colony color	light beige

[Ref.: #63252]	Incubation period	2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43066]

Culture medium

Nutrient broth

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Culture medium growth

[Ref.: #43066]

Culture medium

Nutrient broth

[Ref.: #43066]

Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Tryptic soy broth

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Culture medium growth

[Ref.: #43066]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43066]

Culture medium growth

[Ref.: #64813]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #64813]

Culture medium growth

[Ref.: #64813]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64813]

Culture medium composition

expand / minimize

[Ref.: #64813]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #64813]

Culture medium growth

[Ref.: #64813]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64813]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #43066]	no	growth	25 °C
[Ref.: #43066]		growth	42 °C
[Ref.: #43066]		growth	36-37 °C
[Ref.: #63252]		growth	37 °C
[Ref.: #64813]		growth	37 °C

[Ref.: #43066]	Temperature range	mesophilic
[Ref.: #43066]	Temperature range	thermophilic
[Ref.: #43066]	Temperature range	mesophilic
[Ref.: #63252]	Temperature range	mesophilic
[Ref.: #64813]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43066]	Oxygen tolerance	obligate anaerobe
[Ref.: #63252]	Oxygen tolerance	microaerophile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43066]	(S)-lactate ChEBI	+/-	respiration
[Ref.: #43066]	2-hydroxybutyrate ChEBI	+/-	respiration
[Ref.: #43066]	2-oxobutanoate ChEBI	+	respiration
[Ref.: #43066]	2-oxogluconate	+	respiration
[Ref.: #43066]	3-O-methyl-D-glucose ChEBI	-	respiration
[Ref.: #43066]	4-hydroxyphenylacetic acid ChEBI	-	respiration
[Ref.: #43066]	acetate ChEBI	+	respiration
[Ref.: #43066]	acetoacetate ChEBI	+	respiration
[Ref.: #43066]	alpha-lactose ChEBI	-	respiration
[Ref.: #43066]	aztreonam ChEBI	+/-	respiration
[Ref.: #43066]	bromosuccinate ChEBI	-	respiration
[Ref.: #43066]	cellobiose ChEBI	-	respiration
[Ref.: #43066]	citrate ChEBI	+	builds base from
[Ref.: #43066]	citrate ChEBI	+/-	respiration
[Ref.: #43066]	D-arabitol ChEBI	-	respiration
[Ref.: #43066]	D-aspartate ChEBI	-	respiration
[Ref.: #43066]	D-fructose ChEBI	+/-	respiration
[Ref.: #43066]	D-fructose 6-phosphate ChEBI	+/-	respiration
[Ref.: #43066]	D-fucose ChEBI	-	respiration
[Ref.: #43066]	D-galactose ChEBI	+/-	respiration
[Ref.: #43066]	D-galacturonic acid ChEBI	+/-	respiration
[Ref.: #43066]	D-gluconate ChEBI	-	respiration
[Ref.: #43066]	D-glucose ChEBI	+/-	respiration
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #43066]	D-glucose 6-phosphate ChEBI	+/-	respiration
[Ref.: #43066]	D-glucuronate ChEBI	+/-	respiration
[Ref.: #43066]	D-malate ChEBI	+/-	respiration
[Ref.: #43066]	D-malate ChEBI	-	respiration
[Ref.: #43066]	D-mannitol ChEBI	-	respiration
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #43066]	D-mannose ChEBI	-	respiration
[Ref.: #43066]	D-saccharate ChEBI	-	respiration
[Ref.: #43066]	D-serine ChEBI	-	respiration
[Ref.: #43066]	D-sorbitol ChEBI	-	respiration
[Ref.: #43066]	D-trehalose ChEBI	-	respiration
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #43066]	dextrin ChEBI	+/-	respiration
[Ref.: #43066]	esculin ChEBI	-	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #43066]	formate ChEBI	-	respiration
[Ref.: #43066]	fructose ChEBI	+/-	assimilation
[Ref.: #43066]	galactose ChEBI	-	fermentation
[Ref.: #43066]	gamma-aminobutyric acid ChEBI	-	respiration
[Ref.: #43066]	gelatin ChEBI	-	hydrolysis
[Ref.: #43066]	gelatin ChEBI	-	respiration
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #43066]	gentiobiose ChEBI	-	respiration
[Ref.: #43066]	glucose ChEBI	+/-	assimilation
[Ref.: #43066]	glucuronamide ChEBI	+/-	respiration
[Ref.: #43066]	glycerol ChEBI	-	fermentation
[Ref.: #43066]	glycerol ChEBI	+	respiration
[Ref.: #43066]	glycine-proline ChEBI	+/-	respiration
[Ref.: #43066]	glycogen ChEBI	+/-	assimilation
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #43066]	inosine ChEBI	-	respiration
[Ref.: #43066]	L-alanine ChEBI	-	respiration
[Ref.: #43066]	L-arginine ChEBI	-	respiration
[Ref.: #43066]	L-aspartate ChEBI	+/-	respiration
[Ref.: #43066]	L-fucose ChEBI	-	respiration
[Ref.: #43066]	L-galactonic acid gamma-lactone ChEBI	-	respiration
[Ref.: #43066]	L-glutamate ChEBI	+/-	respiration
[Ref.: #43066]	L-histidine 2-naphthylamide ChEBI	+/-	respiration
[Ref.: #43066]	L-malate ChEBI	+	respiration
[Ref.: #43066]	L-pyroglutamic acid ChEBI	+/-	respiration
[Ref.: #43066]	L-rhamnose ChEBI	-	respiration
[Ref.: #43066]	L-serine ChEBI	+/-	respiration
[Ref.: #43066]	lactose ChEBI	-	fermentation
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #43066]	lithium chloride ChEBI	+/-	respiration
[Ref.: #43066]	maltose ChEBI	+/-	assimilation
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #43066]	mannitol ChEBI	-	fermentation
[Ref.: #43066]	mannose ChEBI	-	fermentation
[Ref.: #43066]	melibiose ChEBI	-	respiration
[Ref.: #43066]	methyl (R)-lactate ChEBI	+/-	respiration
[Ref.: #43066]	methyl D-glucoside ChEBI	-	respiration
[Ref.: #43066]	methyl pyruvate ChEBI	+/-	respiration
[Ref.: #43066]	myo-inositol ChEBI	-	respiration
[Ref.: #43066]	N-acetyl-beta-D-mannosamine ChEBI	-	respiration
[Ref.: #43066]	N-acetylgalactosamine ChEBI	-	respiration
[Ref.: #43066]	N-acetylglucosamine ChEBI	-	respiration
[Ref.: #43066]	n-acetylneuraminate ChEBI	-	respiration
[Ref.: #43066]	nitrate ChEBI	-	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #43066]	nitrite ChEBI	-	reduction
[Ref.: #43066]	pectin ChEBI	-	respiration
[Ref.: #43066]	propionate ChEBI	-	respiration
[Ref.: #43066]	quinate ChEBI	-	respiration
[Ref.: #43066]	raffinose ChEBI	-	respiration
[Ref.: #43066]	ribose ChEBI	+	assimilation
[Ref.: #43066]	ribose ChEBI	+	fermentation
[Ref.: #43066]	salicin ChEBI	-	fermentation
[Ref.: #43066]	salicin ChEBI	-	respiration
[Ref.: #43066]	sodium butyrate ChEBI	+/-	respiration
[Ref.: #43066]	stachyose ChEBI	-	respiration
[Ref.: #43066]	sucrose ChEBI	+/-	assimilation
[Ref.: #43066]	sucrose ChEBI	-	respiration
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #43066]	trehalose ChEBI	-	fermentation
[Ref.: #43066]	turanose ChEBI	+	respiration
[Ref.: #43066]	tween 40 ChEBI	+	respiration
[Ref.: #43066]	tyrosine ChEBI	-	hydrolysis
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #43066]	xylose ChEBI	-	fermentation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43066]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43066]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #43066]	acid phosphatase	+	3.1.3.2
[Ref.: #43066]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #43066]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43066]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43066]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43066]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #43066]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43066]	beta-galactosidase	-	3.2.1.23
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #43066]	beta-glucosidase	-	3.2.1.21
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #43066]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne
[Ref.: #43066]	catalase	+	1.11.1.6
[Ref.: #68379]	catalase	+	1.11.1.6	* from API Coryne
[Ref.: #43066]	cystine arylamidase	-	3.4.11.3
[Ref.: #43066]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43066]	esterase (C 4)	+
[Ref.: #43066]	esterase Lipase (C 8)	+
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #43066]	leucine arylamidase	+	3.4.11.1
[Ref.: #43066]	lipase (C 14)	-
[Ref.: #43066]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #43066]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43066]	pyrazinamidase	-	3.5.1.B15
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #43066]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #43066]	trypsin	-	3.4.21.4
[Ref.: #43066]	urease	+	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #43066]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43066]

Fatty acid	Percentage
C18:1ω9c	34
C16:0	30
C18:0	19

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #64813]	4287	-	-	-	+	-	-	-	-	-	+	-	-	-	+/-	-	-	-	-	-	-	+
[Ref.: #64813]	4209	-	-	+	+	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	acetoin degradation	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	vitamin K metabolism	80	4 of 5
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	glutamate and glutamine metabolism	71.43	20 of 28
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	purine metabolism	68.09	64 of 94
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	leucine metabolism	61.54	8 of 13
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	NAD metabolism	61.11	11 of 18
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	oxidative phosphorylation	57.14	52 of 91
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	tryptophan metabolism	52.63	20 of 38
[Ref.: #66794]	lysine metabolism	52.38	22 of 42
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	propionate fermentation	50	5 of 10
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	molybdenum cofactor biosynthesis	44.44	4 of 9
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	Entner Doudoroff pathway	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	degradation of sugar alcohols	37.5	6 of 16
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	3-phenylpropionate degradation	33.33	5 of 15
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	starch degradation	30	3 of 10
[Ref.: #66794]	phenol degradation	30	6 of 20
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	degradation of pentoses	28.57	8 of 28
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	carotenoid biosynthesis	27.27	6 of 22
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	vitamin B12 metabolism	23.53	8 of 34
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43066]	Sample type/isolated from	human patients with eye specimens

[Ref.: #63252]	Sample type/isolated from	Human eye
[Ref.: #63252]	Country	Japan
[Ref.: #63252]	Country ISO 3 Code	JPN
[Ref.: #63252]	Continent	Asia

[Ref.: #64813]	Sample type/isolated from	eye infection, human
[Ref.: #64813]	Country	Japan
[Ref.: #64813]	Country ISO 3 Code	JPN
[Ref.: #64813]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Organ	#Eye
#Infection	#Patient	#Specimen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ938705 (>99% sequence identity) for Corynebacterium from Microbeatlas

Aquatic Samples	126
Soil Samples	92
Animal Samples	5291
Plant Samples	102
Total Samples	5611

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43066]	16S rRNA gene sequences	KJ938705	1466	ENA	1544413 tax ID
[Ref.: #64813]	Corynebacterium lowii culture NML:130205 strain R-50084 16S ribosomal RNA gene, partial sequence	KJ938704	1465	ENA	1544413 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Corynebacterium lowii DSM 107388	2923646667	draft	JGI IMG/M	1544413 tax ID	*

[Ref.: #43066]	GC-content	62.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #43066]	GC-content	62.8 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #64813]

Culture collection no.

LMG 28276, CCUG 65815, DSM 107388, NML 130206

[Ref.: #96760]

SI-ID 402250

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium lowii sp. nov. and Corynebacterium oculi sp. nov., derived from human clinical disease and an emended description of Corynebacterium mastitidis.	Bernard KA, Pacheco AL, Loomer C, Burdz T, Wiebe D, Huynh C, Kaplen B, Olson AB, Cnockaert M, Eguchi H, Kuwahara T, Nakayama-Imaohji H, Shiota H, Boudewijns M, Van Hoecke F, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijsem.0.001059	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43066

Kathryn A. Bernard, Ana Luisa Pacheco, Courtney Loomer, Tamara Burdz, Deborah Wiebe, Chris Huynh, Brynn Kaplen, Adam B. Olson, Margo Cnockaert, Hiroshi Eguchi, Tomomi Kuwahara, Haruyuki Nakayama-Imaohji, Hiroshi Shiota, Michael Boudewijns, Frederik Van Hoecke and Peter Vandamme: Corynebacterium lowii sp. nov. and Corynebacterium oculi sp. nov., derived from human clinical disease and an emended description of Corynebacterium mastitidis. IJSEM 66: 2803 - 2812 2016 ( DOI 10.1099/ijsem.0.001059 , PubMed 27045762 )

#63252 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 65815

#64813

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107388

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68379

Automatically annotated from API Coryne .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96760

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402250.1 )

* These data were automatically processed and therefore are not curated

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