Compostibacter hankyongensis (KACC 18745, JCM 17664, BS27)

Name: Compostibacter hankyongensis (KACC 18745, JCM 17664, BS27)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140616

Type strain

Strain Designation BS27

Culture col. no. KACC 18745 JCM 17664 BS27

NCBI tax ID(s) 1007089

Special Collections JCM Literature strains

History JCM <-- M. K. Kim BS27.

Links

Compostibacter hankyongensis BS27 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from mushroom compost samples.

Gram-negative rod-shaped colony-forming obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133379

JCM 17664

@ref 20215

Last LPSN update 2026-05-29 08:39:45

Domain Bacteria

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Compostibacter

Species Compostibacter hankyongensis

Full scientific name Compostibacter hankyongensis Siddiqi et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
43133	negative	1.2-2.0 µm	0.3-0.5 µm	rod-shaped
125439	negative					99.429

Colony morphology

@ref	Colony color	Colony shape
43133	milky-white	circular

Pigmentation

@ref	Production	Name
43133		flexirubin type pigments

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
43133	positive	optimum	30
43133	positive	growth	15-37
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
43133	positive	optimum	6.0-7.0
43133	positive	growth	6-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43133	obligate aerobe
125439	facultative anaerobe	92.714

Spore formation

@ref	Spore formation	Confidence
125439		99.745

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43133	NaCl	positive	growth	0.5-1.5 %
43133	NaCl	positive	optimum	0-0.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43133	16193 ChEBI	3-hydroxybenzoate	-	assimilation
43133	37054 ChEBI	3-hydroxybutyrate	-	assimilation
43133	17879 ChEBI	4-hydroxybenzoate	-	assimilation
43133	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43133		casein	-	hydrolysis
43133	17029 ChEBI	chitin	-	hydrolysis
43133	17634 ChEBI	D-glucose	+	assimilation
43133	16899 ChEBI	D-mannitol	-	assimilation
43133	16024 ChEBI	D-mannose	+	assimilation
43133	16988 ChEBI	D-ribose	+	assimilation
43133	17924 ChEBI	D-sorbitol	+	assimilation
43133	27689 ChEBI	decanoate	-	assimilation
43133		dnase agar	-	hydrolysis
43133	4853 ChEBI	esculin	+	hydrolysis
43133	28087 ChEBI	glycogen	-	assimilation
43133	17240 ChEBI	itaconate	-	assimilation
43133	16977 ChEBI	L-alanine	-	assimilation
43133	30849 ChEBI	L-arabinose	-	assimilation
43133	18287 ChEBI	L-fucose	-	assimilation
43133	15971 ChEBI	L-histidine	-	assimilation
43133	17203 ChEBI	L-proline	-	assimilation
43133	62345 ChEBI	L-rhamnose	+	assimilation
43133	17115 ChEBI	L-serine	-	assimilation
43133	24996 ChEBI	lactate	-	assimilation
43133	25115 ChEBI	malate	-	assimilation
43133	17306 ChEBI	maltose	-	assimilation
43133	28053 ChEBI	melibiose	+	assimilation
43133	17268 ChEBI	myo-inositol	-	assimilation
43133	506227 ChEBI	N-acetylglucosamine	+	assimilation
43133	17632 ChEBI	nitrate	+	reduction
43133	18401 ChEBI	phenylacetate	+	assimilation
43133		potassium 2-dehydro-D-gluconate	-	assimilation
43133		potassium 5-dehydro-D-gluconate	-	assimilation
43133	32032 ChEBI	potassium gluconate	-	assimilation
43133	17272 ChEBI	propionate	-	assimilation
43133	17814 ChEBI	salicin	+	assimilation
43133	32954 ChEBI	sodium acetate	-	assimilation
43133	53258 ChEBI	sodium citrate	-	assimilation
43133	62983 ChEBI	sodium malonate	-	assimilation
43133	28017 ChEBI	starch	-	hydrolysis
43133	9300 ChEBI	suberic acid	-	assimilation
43133	17992 ChEBI	sucrose	+	assimilation
43133	53426 ChEBI	tween 80	-	hydrolysis
43133	31011 ChEBI	valerate	-	assimilation
43133	37166 ChEBI	xylan	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43133	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43133	acid phosphatase	+	3.1.3.2
43133	alkaline phosphatase	+	3.1.3.1
43133	alpha-chymotrypsin	-	3.4.21.1
43133	alpha-fucosidase	+	3.2.1.51
43133	alpha-galactosidase	+	3.2.1.22
43133	alpha-glucosidase	+	3.2.1.20
43133	alpha-mannosidase	+	3.2.1.24
43133	arginine dihydrolase	-	3.5.3.6
43133	beta-galactopyranosidase	+
43133	beta-galactosidase	+	3.2.1.23
43133	beta-glucosidase	+	3.2.1.21
43133	beta-glucuronidase	+	3.2.1.31
43133	catalase	+	1.11.1.6
43133	cystine arylamidase	-	3.4.11.3
43133	cytochrome oxidase	-	1.9.3.1
43133	esterase	+
43133	esterase Lipase (C 8)	+
43133	gelatinase	-
43133	leucine arylamidase	+	3.4.11.1
43133	lipase	-
43133	naphthol-AS-BI-phosphohydrolase	+
43133	trypsin	-	3.4.21.4
43133	urease	-	3.5.1.5
43133	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43133

Fatty acid	Percentage
C15:0 iso	29.7
C17:0 iso 3OH	22.7
C16:1ω7c / C16:1ω6c	13.1
C17:1 iso I /C17:1 anteiso B	9.4
C17:0 iso	7.4
C15:0 iso 3OH	4.4
C15:0 anteiso	3.7
C16:0 2OH	2.6
C16:0 3OH	2.4
C16:0	1.9
C16:1ω5c	1.7
C14:0	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting
#Host	#Fungi	#Mushroom

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
43133	mushroom compost samples	Daejeon city, Republic of Korea	Republic of Korea	KOR	Asia
67770	Mushroom compost	Daejeon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence JF806525 (>99% sequence identity) for Compostibacter hankyongensis subclade from Microbeatlas

Aquatic Samples	89
Soil Samples	121
Animal Samples	28
Plant Samples	70
Total Samples	308

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954107v1 assembly for Compostibacter hankyongensis JCM 17664	contig	GCA_039541075	1007089	65.54

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43133	Compostibacter hankyongensis strain BS27 16S ribosomal RNA gene, partial sequence	JF806525	1447		1007089

GC content

@ref	GC-content (mol%)	Method
43133	53	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3954107v1 assembly for Compostibacter hankyongensis JCM 17664
NCBI: GCA_039541075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.71	no
125439	motility	BacteriaNetⓘ	yes	58.93	no
125439	gram_stain	BacteriaNetⓘ	negative	99.43	no
125439	spore_formation	BacteriaNetⓘ	no	99.75	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Compostibacter hankyongensis gen. nov., sp. nov., isolated from compost.	Siddiqi MZ, Muhammad Shafi S, Choi KD, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.001252	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43133	Muhammad Zubair Siddiqi, Siddiqi Muhammad Shafi, Kang Duk Choi and Wan-Taek Im: Compostibacter hankyongensis gen. nov., sp. nov., isolated from compost. IJSEM 66: 3681 - 3687 2016 ( DOI 10.1099/ijsem.0.001252 , PubMed 27335062 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Compostibacter hankyongensis (KACC 18745, JCM 17664, BS27)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039541075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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