Name: Hymenobacter coalescens WW84
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140614

Type strain:

Species: Hymenobacter coalescens

Strain Designation: WW84

Culture col. no.: JCM 19493, KCTC 32530

Strain history: <- Chi-Nam Seong (Sunchon Nat. Univ.) <-Kang, JW

NCBI tax ID(s): 1525362 (species)

Section

Hymenobacter coalescens WW84 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from freshwater of Woopo wetland.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter coalescens**
	Full Scientific Name (LPSN)	Hymenobacter coalescens Kang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43129]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43129]	Cell length	2.5-4.5 µm

[Ref.: #43129]	Cell width	0.8 µm

[Ref.: #43129]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43129]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43129]	Colony size	1-2 mm
[Ref.: #43129]	Colony color	red-pink
[Ref.: #43129]	Colony shape	circular
[Ref.: #43129]	Incubation period	3 days
[Ref.: #43129]	Cultivation medium used	R2A agar

[Ref.: #43129]	Pigment production	no
[Ref.: #43129]	Pigment name	flexirubin-type pigments
[Ref.: #43129]	Pigment production	yes
[Ref.: #43129]	Pigment name	Hydroxyflexixanthin

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

PCA

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Culture medium growth

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Culture medium

GYEA

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

		Temperature
[Ref.: #43129]	optimum	30 °C
[Ref.: #43129]	growth	4-40 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #43129]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43129]			optimum	7
[Ref.: #43129]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43129]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43129]		NaCl		growth	0-0.4	%(w/v)
[Ref.: #43129]		NaCl		optimum	0	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43129]	arabinose ChEBI	-	assimilation
[Ref.: #43129]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43129]	casein	+	hydrolysis
[Ref.: #43129]	chitin ChEBI	-	hydrolysis
[Ref.: #43129]	dna ChEBI	-	hydrolysis
[Ref.: #43129]	esculin ChEBI	+	hydrolysis
[Ref.: #43129]	fructose ChEBI	-	builds acid from
[Ref.: #43129]	galactose ChEBI	-	builds acid from
[Ref.: #43129]	gelatin ChEBI	+	hydrolysis
[Ref.: #43129]	glucose ChEBI	+	builds acid from
[Ref.: #43129]	glucose ChEBI	-	assimilation
[Ref.: #43129]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43129]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #43129]	lactose ChEBI	-	builds acid from
[Ref.: #43129]	malate ChEBI	-	assimilation
[Ref.: #43129]	maltose ChEBI	-	builds acid from
[Ref.: #43129]	mannitol ChEBI	-	builds acid from
[Ref.: #43129]	mannose ChEBI	-	builds acid from
[Ref.: #43129]	nitrate ChEBI	-	reduction
[Ref.: #43129]	pectin ChEBI	-	hydrolysis
[Ref.: #43129]	rhamnose ChEBI	-	builds acid from
[Ref.: #43129]	sodium alginate ChEBI	-	hydrolysis
[Ref.: #43129]	starch ChEBI	+	hydrolysis
[Ref.: #43129]	sucrose ChEBI	-	builds acid from
[Ref.: #43129]	trehalose ChEBI	-	builds acid from
[Ref.: #43129]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43129]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43129]	urea ChEBI	-	hydrolysis
[Ref.: #43129]	xanthine ChEBI	-	hydrolysis
[Ref.: #43129]	xylan ChEBI	-	hydrolysis
[Ref.: #43129]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43129]	amikacin ChEBI				yes	30	µg (disc)
[Ref.: #43129]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43129]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43129]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43129]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #43129]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43129]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #43129]	penicillin ChEBI	yes	10	Unit
[Ref.: #43129]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #43129]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43129]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43129]		hydrogen sulfide ChEBI	no
[Ref.: #43129]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43129]	acid phosphatase	+	3.1.3.2
[Ref.: #43129]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43129]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43129]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43129]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43129]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43129]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43129]	beta-galactosidase	-	3.2.1.23
[Ref.: #43129]	beta-glucosidase	-	3.2.1.21
[Ref.: #43129]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43129]	catalase	+	1.11.1.6
[Ref.: #43129]	cystine arylamidase	-	3.4.11.3
[Ref.: #43129]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43129]	esterase (C 4)	+/-
[Ref.: #43129]	esterase Lipase (C 8)	+
[Ref.: #43129]	leucine arylamidase	+	3.4.11.1
[Ref.: #43129]	lipase (C 14)	-
[Ref.: #43129]	N-acetyl-beta-glucosaminidase	+/-	3.2.1.52
[Ref.: #43129]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43129]	trypsin	-	3.4.21.4
[Ref.: #43129]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43129]

Fatty acid	Percentage
C17:1 iso I /C17:1 anteiso B	19.8
C15:0 iso	12.9
C16:0	12.3
C18:0	12.1
C15:0 anteiso	8.2
C18:1ω9c	5
C17:0 iso 3OH	4.8
C18:1ω6c / C18:1ω7c	3.1
C17:0 anteiso	3
C14:0	2.9
C17:0 iso	2.8
C15:0 iso 3OH	2.7
C16:1ω7c / C16:1ω6c	2
C16:1ω5c	1.7
C17:0	1.5
C16:1 iso H	1.2
iso-C15:1 H / iso-C15:1 I / C13:0 3-OH	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43129]	Sample type/isolated from	freshwater of Woopo wetland
[Ref.: #43129]	Geographic location (country and/or sea, region)	Woopo wetland, Republic of Korea
[Ref.: #43129]	Country	Republic of Korea
[Ref.: #43129]	Country ISO 3 Code	KOR
[Ref.: #43129]	Continent	Asia
[Ref.: #43129]	Geographic location	35.0000°/128.0000°

[Ref.: #67770]	Sample type/isolated from	Freshwaterfrom the Woopo wetland
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	Fresh freshwater, inland wetland of Woopo
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	35.5500°/128.4170°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43129]	16S rRNA gene sequences	KF631222	1446	ENA	1525362 tax ID

[Ref.: #67771]	GC-content	59.0 mol%
[Ref.: #67770]	GC-content	59 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43129]

Culture collection no.

JCM 19493, KCTC 32530

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter coalescens sp. nov., isolated from wetland freshwater.	Kang JW, Baik KS, Im WT, Seong CN	Int J Syst Evol Microbiol	10.1099/ijsem.0.001226	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43129

Joo Won Kang, Keun Sik Baik, Wan-Taek Im and Chi Nam Seong: Hymenobacter coalescens sp. nov., isolated from wetland freshwater. IJSEM 66: 3546 - 3551 2016 ( DOI 10.1099/ijsem.0.001226 , PubMed 27267356 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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