Name: Salinicola tamaricis F01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140612

Type strain:

Species: Salinicola tamaricis

Strain Designation: F01

Culture col. no.: KCTC 42855, CCTCC AB 2015304

Strain history: <- Zhao Guoyan, Shandong Normal Univ.

NCBI tax ID(s): 1771309 (species)

Section

Salinicola tamaricis F01 is an aerobe, halotolerant, mesophilic bacterium that forms circular colonies and was isolated from halophyte Tamarix chinensis was collected from the seashore saline soil.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
halotolerant
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Salinicola*
	Species	**Salinicola tamaricis**
	Full Scientific Name (LPSN)	Salinicola tamaricis Zhao et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43253]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.972

[Ref.: #43253]	Cell length	1.3-2.9 µm

[Ref.: #43253]	Cell width	0.8-1.0 µm

[Ref.: #43253]	Cell shape	rod-shaped

[Ref.: #43253]	Motility	yes

[Ref.: #43253]	Colony size	1-1.5 mm
[Ref.: #43253]	Colony color	cream
[Ref.: #43253]	Colony shape	circular
[Ref.: #43253]	Incubation period	2 days
[Ref.: #43253]	Cultivation medium used	HM medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43253]

Culture medium

HM medium

[Ref.: #43253]

Culture medium growth

[Ref.: #43253]

Culture medium

SW10 medium

[Ref.: #43253]

Culture medium growth

		Temperature
[Ref.: #43253]	optimum	30 °C
[Ref.: #43253]	growth	15-45 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #43253]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43253]			optimum	6.0-7.0
[Ref.: #43253]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43253]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43253]	Type of spore	endospore
[Ref.: #43253]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

[Ref.: #43253]

Halophily / tolerance level

halotolerant

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43253]		NaCl		growth	0-25.0	%(w/v)
[Ref.: #43253]		NaCl		optimum	5	%(w/v)

[Ref.: #43253]	Name of tolerated compound	Manganese
[Ref.: #43253]	Tolerated concentration	30
[Ref.: #43253]	Name of tolerated compound	lead
[Ref.: #43253]	Tolerated concentration	4
[Ref.: #43253]	Name of tolerated compound	nickel
[Ref.: #43253]	Tolerated concentration	3
[Ref.: #43253]	Name of tolerated compound	Ferrous ions
[Ref.: #43253]	Tolerated concentration	12
[Ref.: #43253]	Name of tolerated compound	Copper ions
[Ref.: #43253]	Tolerated concentration	4

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43253]	amygdalin ChEBI	-	builds acid from
[Ref.: #43253]	arabinitol ChEBI	+	builds acid from
[Ref.: #43253]	arabinose ChEBI	+	carbon source
[Ref.: #43253]	arabinose ChEBI	+	builds acid from
[Ref.: #43253]	arbutin ChEBI	-	builds acid from
[Ref.: #43253]	aspartate ChEBI	+	nitrogen source
[Ref.: #43253]	aspartate ChEBI	+	carbon source
[Ref.: #43253]	casein	-	hydrolysis
[Ref.: #43253]	cellobiose ChEBI	-	carbon source
[Ref.: #43253]	cellobiose ChEBI	+	builds acid from
[Ref.: #43253]	citrate ChEBI	+	builds acid from
[Ref.: #43253]	D-fructose ChEBI	+	builds acid from
[Ref.: #43253]	D-galactose ChEBI	+	builds acid from
[Ref.: #43253]	D-glucose ChEBI	+	builds acid from
[Ref.: #43253]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43253]	D-mannose ChEBI	+	builds acid from
[Ref.: #43253]	D-ribose ChEBI	+	builds acid from
[Ref.: #43253]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #43253]	D-sorbose ChEBI	+	builds acid from
[Ref.: #43253]	D-tagatose ChEBI	+	builds acid from
[Ref.: #43253]	dna ChEBI	+	hydrolysis
[Ref.: #43253]	erythritol ChEBI	+	builds acid from
[Ref.: #43253]	esculin ChEBI	-	hydrolysis
[Ref.: #43253]	ethanol ChEBI	+	carbon source
[Ref.: #43253]	fucose ChEBI	+	builds acid from
[Ref.: #43253]	galactose ChEBI	+	carbon source
[Ref.: #43253]	gelatin ChEBI	+	hydrolysis
[Ref.: #43253]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43253]	glucose ChEBI	+	fermentation
[Ref.: #43253]	glucose ChEBI	+	carbon source
[Ref.: #43253]	glycerol ChEBI	+	builds acid from
[Ref.: #43253]	glycogen ChEBI	-	builds acid from
[Ref.: #43253]	inulin ChEBI	-	builds acid from
[Ref.: #43253]	isoleucine ChEBI	+	nitrogen source
[Ref.: #43253]	isoleucine ChEBI	+	carbon source
[Ref.: #43253]	L-alanine ChEBI	+	nitrogen source
[Ref.: #43253]	L-alanine ChEBI	+	carbon source
[Ref.: #43253]	L-arginine ChEBI	+	nitrogen source
[Ref.: #43253]	L-arginine ChEBI	+	carbon source
[Ref.: #43253]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #43253]	L-asparagine ChEBI	+	carbon source
[Ref.: #43253]	L-cysteine ChEBI	+	nitrogen source
[Ref.: #43253]	L-cysteine ChEBI	+	carbon source
[Ref.: #43253]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #43253]	L-glutamate ChEBI	+	carbon source
[Ref.: #43253]	L-glycine	+	nitrogen source
[Ref.: #43253]	L-glycine	+	carbon source
[Ref.: #43253]	L-histidine ChEBI	+	nitrogen source
[Ref.: #43253]	L-histidine ChEBI	+	carbon source
[Ref.: #43253]	L-lysine ChEBI	+	nitrogen source
[Ref.: #43253]	L-lysine ChEBI	+	carbon source
[Ref.: #43253]	L-proline ChEBI	+	nitrogen source
[Ref.: #43253]	L-proline ChEBI	+	carbon source
[Ref.: #43253]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #43253]	L-serine ChEBI	+	nitrogen source
[Ref.: #43253]	L-serine ChEBI	+	carbon source
[Ref.: #43253]	L-threonine ChEBI	-	nitrogen source
[Ref.: #43253]	L-threonine ChEBI	-	carbon source
[Ref.: #43253]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #43253]	L-tyrosine ChEBI	-	carbon source
[Ref.: #43253]	lactose ChEBI	-	carbon source
[Ref.: #43253]	lactose ChEBI	+	builds acid from
[Ref.: #43253]	maltose ChEBI	+	carbon source
[Ref.: #43253]	maltose ChEBI	+	builds acid from
[Ref.: #43253]	mannitol ChEBI	+	carbon source
[Ref.: #43253]	mannose ChEBI	+	carbon source
[Ref.: #43253]	melibiose ChEBI	+	builds acid from
[Ref.: #43253]	methionine ChEBI	-	nitrogen source
[Ref.: #43253]	methionine ChEBI	-	carbon source
[Ref.: #43253]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43253]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43253]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43253]	nitrate ChEBI	-	reduction
[Ref.: #43253]	phenylalanine ChEBI	-	nitrogen source
[Ref.: #43253]	phenylalanine ChEBI	-	carbon source
[Ref.: #43253]	raffinose ChEBI	-	carbon source
[Ref.: #43253]	raffinose ChEBI	-	builds acid from
[Ref.: #43253]	ribitol ChEBI	+	builds acid from
[Ref.: #43253]	salicin ChEBI	-	builds acid from
[Ref.: #43253]	sodium acetate ChEBI	+	carbon source
[Ref.: #43253]	sodium citrate ChEBI	+	carbon source
[Ref.: #43253]	sodium pyruvate ChEBI	+	carbon source
[Ref.: #43253]	sorbitol ChEBI	+	carbon source
[Ref.: #43253]	starch ChEBI	-	hydrolysis
[Ref.: #43253]	starch ChEBI	-	carbon source
[Ref.: #43253]	starch ChEBI	-	builds acid from
[Ref.: #43253]	sucrose ChEBI	+	carbon source
[Ref.: #43253]	sucrose ChEBI	+	builds acid from
[Ref.: #43253]	trehalose ChEBI	+	carbon source
[Ref.: #43253]	trehalose ChEBI	-	builds acid from
[Ref.: #43253]	tryptophan ChEBI	-	nitrogen source
[Ref.: #43253]	tryptophan ChEBI	-	carbon source
[Ref.: #43253]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43253]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43253]	urea ChEBI	+	hydrolysis
[Ref.: #43253]	valine ChEBI	+	nitrogen source
[Ref.: #43253]	valine ChEBI	+	carbon source
[Ref.: #43253]	xylitol ChEBI	+	builds acid from
[Ref.: #43253]	xylose ChEBI	+	carbon source
[Ref.: #43253]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43253]	ampicillin ChEBI	yes	20	µg
[Ref.: #43253]	chloramphenicol ChEBI				yes	30	µg
[Ref.: #43253]	erythromycin ChEBI				yes	15	µg
[Ref.: #43253]	kanamycin ChEBI	yes	60	µg
[Ref.: #43253]	nalidixic acid ChEBI	yes	30	µg
[Ref.: #43253]	neomycin sulfate ChEBI	yes	200	µg
[Ref.: #43253]	rifampicin ChEBI	yes	30	µg
[Ref.: #43253]	streptomycin ChEBI				yes	30	µg

	Metabolite	Production
[Ref.: #43253]	acetoin ChEBI	no
[Ref.: #43253]	exopolysaccharide ChEBI	no
[Ref.: #43253]	hydrogen sulfide ChEBI	no
[Ref.: #43253]	indole ChEBI	no
[Ref.: #43253]	poly-beta-hydroxyalkanoate	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43253]		acetoin ChEBI	-
[Ref.: #43253]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #43253]	beta-galactosidase	-	3.2.1.23
[Ref.: #43253]	catalase	+	1.11.1.6
[Ref.: #43253]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43253]	lysine decarboxylase	+	4.1.1.18
[Ref.: #43253]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43253]	phenylalanine deaminase	+	4.3.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43253]

Fatty acid	Percentage
C18:1ω7c	40.8
C16:0	28.6
C16:1ω7c / C15:0 iso 2OH	9.2
C12:0 3OH	5.2
C14:0	2.9
C14:0 3OH / C16:1 iso	2.7
cyclo-C19:0ω8c	2.3
C18:1ω9c	2.2
C10:0	1.8
C12:0	1.3
C18:0	0.92
11-methyl C18:1ω7c	0.7
C14:0 2OH	0.3
C12:0 2OH	0.2
C17:0 iso	0.2
C18:2ω6,9c / anteiso-C18:0	0.2
C16:0 3OH	0.12
cyclo-C17:0	0.1
C11:0 iso	0.1
C10:0 3OH	0.09

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43253]	Sample type/isolated from	halophyte Tamarix chinensis was collected from the seashore saline soil
[Ref.: #43253]	Geographic location (country and/or sea, region)	Yellow River delta, China
[Ref.: #43253]	Country	China
[Ref.: #43253]	Country ISO 3 Code	CHN
[Ref.: #43253]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From the leave of `Suaeda salsa` Pall.
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Condition	#Saline	-
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT343976 (>99% sequence identity) for Salinicola from Microbeatlas

Aquatic Samples	162
Soil Samples	113
Animal Samples	162
Plant Samples	26
Total Samples	463

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43253]	16S rRNA gene sequences	KT343976	1529	ENA	1771309 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salinicola tamaricis F01	GCA_003006155	complete	GenBank	1771309 tax ID	*
[Ref.: #66792]	Salinicola tamaricis F01	2788500331	complete	JGI IMG/M	1771309 tax ID	*

[Ref.: #43253]

GC-content

65.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinicola tamaricis F01 NCBI: GCA_003006155.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinicola tamaricis F01 NCBI: GCA_003006155.1
[Ref.: #69480]	flagellated	no	61.352	no
[Ref.: #69480]	gram-positive	no	98.472	yes
[Ref.: #69480]	anaerobic	no	98.71	no
[Ref.: #69480]	aerobic	yes	87.867	no
[Ref.: #69480]	halophile	yes	87.484	no
[Ref.: #69480]	spore-forming	no	97.379	yes
[Ref.: #69480]	glucose-util	yes	93.002	yes
[Ref.: #69480]	thermophile	no	99.63	yes
[Ref.: #69480]	motile	yes	91.328	no
[Ref.: #69480]	glucose-ferment	yes	54.834	yes

Availability in culture collections External links

[Ref.: #43253]

Culture collection no.

KCTC 42855, CCTCC AB 2015304

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of the Heavy-Metal-Tolerant Endophytic Type Strain of Salinicola tamaricis.	Shang N, Zhu Q, Dai M, Zhao G	Genome Announc	10.1128/genomeA.00358-18	2018	*
Phylogeny	Salinicola tamaricis sp. nov., a heavy-metal-tolerant, endophytic bacterium isolated from the halophyte Tamarix chinensis Lour.	Zhao GY, Zhao LY, Xia ZJ, Zhu JL, Liu D, Liu CY, Chen XL, Zhang YZ, Zhang XY, Dai MX	Int J Syst Evol Microbiol	10.1099/ijsem.0.001868	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43253

Guo-Yan Zhao, Li-Ya Zhao, Zhi-Jie Xia, Jin-Lei Zhu, Di Liu, Chun-Yue Liu, Xiu-Lan Chen, Yu-Zhong Zhang, Xi-Ying Zhang and Mei-Xue Dai: Salinicola tamaricis sp. nov., a heavy-metal-tolerant, endophytic bacterium isolated from the halophyte Tamarix chinensis Lour. IJSEM 67: 1813 - 1819 2017 ( DOI 10.1099/ijsem.0.001868 , PubMed 28604335 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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