Shewanella benthica (DSM 8812, ATCC 43992, UM 145)

Name: Shewanella benthica (DSM 8812, ATCC 43992, UM 145)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14061

Type strain

Strain Designation UM 145, W 145

Culture col. no. DSM 8812 ATCC 43992 UM 145 W 145

NCBI tax ID(s) 43661

Special Collections DSMZ

History <- ATCC <- R. M. Weiner; UM 145 <- R. R. Colwell

Links

Shewanella benthica UM 145 is a bacterium that was isolated from intestinal scrapings of holothurian Psychropotes longicauda.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 87683

ATCC 43992,DSM 8812

@ref 20215

Last LPSN update 2026-02-09 11:21:18

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella benthica

Full scientific name Shewanella benthica MacDonell and Colwell 1986

BacDive ID	Other strains from **Shewanella benthica** (6)	Type strain
160888	S. benthica JCM 10173
160889	S. benthica JCM 10174
160890	S. benthica JCM 10176
160891	S. benthica JCM 10177
160892	S. benthica JCM 10178
160901	S. benthica JCM 10264

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.7
125438	negative	95.333

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3412	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
3412	positive	growth	4

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Echinodermata
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type	Host species	Geographic location
3412	intestinal scrapings of holothurian Psychropotes longicauda	Psychropotes longicauda	Walvis Ridge

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3412	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1506987v1 assembly for Shewanella benthica DSM 8812	scaffold	GCA_015069875	43661.7	2996159396	43661	45.11
66792	ASM2328408v1 assembly for Shewanella benthica DSM 8812	contig	GCA_023284085	43661.9	8114312386	43661	34.91

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	S.benthica 16S rRNA gene (ATCC 43992)	X82131	1438		43661

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shewanella benthica DSM 8812
NCBI: GCA_015069875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.80	no
125439	motility	BacteriaNetⓘ	yes	81.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	73.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella benthica DSM 8812
NCBI: GCA_015069875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.33	no
125438	anaerobic	anaerobicⓘ	no	78.03	no
125438	aerobic	aerobicⓘ	yes	52.30	no
125438	spore-forming	spore-formingⓘ	no	86.45	no
125438	thermophilic	thermophileⓘ	no	93.86	yes
125438	flagellated	motile2+ⓘ	yes	72.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Microbial membrane lipid adaptations to high hydrostatic pressure in the marine environment.	Tamby A, Sinninghe Damste JS, Villanueva L.	Front Mol Biosci	10.3389/fmolb.2022.1058381	2022
Phylogeny	Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment.	Xiao X, Wang P, Zeng X, Bartlett DH, Wang F	Int J Syst Evol Microbiol	10.1099/ijs.0.64500-0	2007

References

#3412	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8812
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella benthica (DSM 8812, ATCC 43992, UM 145)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_015069875

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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