Name: Shewanella benthica UM 145
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14061

Type strain:

Species: Shewanella benthica

Strain Designation: UM 145, W 145

Culture col. no.: DSM 8812, ATCC 43992

Strain history: <- ATCC <- R. M. Weiner; UM 145 <- R. R. Colwell

NCBI tax ID(s): 43661 (species)

SI-ID 87683

ATCC 43992, DSM 8812

Other strains from Shewanella benthica

S. benthica JCM 10173
S. benthica JCM 10174
S. benthica JCM 10176
S. benthica JCM 10177
S. benthica JCM 10178
S. benthica JCM 10264

Section

Shewanella benthica UM 145 is a psychrophilic bacterium that was isolated from intestinal scrapings of holothurian Psychropotes longicauda.

psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella benthica**
	Full Scientific Name (LPSN)	Shewanella benthica MacDonell and Colwell 1986

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3412]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #3412]

Culture medium growth

[Ref.: #3412]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3412]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3412]			growth	4 °C

[Ref.: #3412]

Temperature range

psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3412]	Sample type/isolated from	intestinal scrapings of holothurian Psychropotes longicauda
[Ref.: #3412]	Host species	Psychropotes longicauda
[Ref.: #3412]	Geographic location (country and/or sea, region)	Walvis Ridge
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Echinodermata
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3412]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	S.benthica 16S rRNA gene (ATCC 43992)	X82131	1438	ENA	43661 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella benthica DSM 8812	GCA_015069875	scaffold	GenBank	43661 tax ID	*
[Ref.: #66792]	Shewanella benthica strain DSM 8812	43661.7	wgs	PATRIC	43661 tax ID	*
[Ref.: #66792]	Shewanella benthica DSM 8812	GCA_023284085	contig	GenBank	43661 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella benthica DSM 8812 NCBI: GCA_015069875.1
[Ref.: #69480]	motile	yes	89.863	no
[Ref.: #69480]	flagellated	yes	74.94	no
[Ref.: #69480]	gram-positive	no	98.099	no
[Ref.: #69480]	anaerobic	no	92.363	no
[Ref.: #69480]	aerobic	no	63.495	no
[Ref.: #69480]	halophile	yes	51.29	no
[Ref.: #69480]	spore-forming	no	95.211	no
[Ref.: #69480]	glucose-util	yes	84.314	no
[Ref.: #69480]	thermophile	no	97.064	yes
[Ref.: #69480]	glucose-ferment	no	75.082	no

Availability in culture collections External links

[Ref.: #3412]

Culture collection no.

DSM 8812, ATCC 43992

[Ref.: #83230]

SI-ID 87683

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment.	Xiao X, Wang P, Zeng X, Bartlett DH, Wang F	Int J Syst Evol Microbiol	10.1099/ijs.0.64500-0	2007	*

References

#3412

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8812

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83230

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87683.1 )

* These data were automatically processed and therefore are not curated

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Shewanella benthica DSM 8812

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