Name: Caulobacter rhizosphaerae 7F14
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140608

Type strain:

Species: Caulobacter rhizosphaerae

Strain Designation: 7F14

Culture col. no.: CGMCC 1.15915, KCTC 52515

Strain history: <- Leni Sun, Anhui Agricultural Univ.

NCBI tax ID(s): 2010972 (species)

Section

Caulobacter rhizosphaerae 7F14 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from rhizosphere soil of cultivated watermelon .

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Caulobacter*
	Species	**Caulobacter rhizosphaerae**
	Full Scientific Name (LPSN)	Caulobacter rhizosphaerae Sun et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43261]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.685

[Ref.: #43261]	Cell length	1.8-3.2 µm

[Ref.: #43261]	Cell width	1.1-1.3 µm

[Ref.: #43261]	Cell shape	rod-shaped

[Ref.: #43261]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.821

[Ref.: #43261]	Flagellum arrangement	polar

[Ref.: #43261]	Colony size	2.0-4.0 mm
[Ref.: #43261]	Colony color	white to pale-yellow
[Ref.: #43261]	Colony shape	circular
[Ref.: #43261]	Incubation period	2 days
[Ref.: #43261]	Cultivation medium used	CM agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43261]

Culture medium

Caulobacter medium (CM) agar

[Ref.: #43261]

Culture medium growth

[Ref.: #43261]

Culture medium composition

expand / minimize

[Ref.: #43261]

Culture medium

Nutrient agar (NA)

[Ref.: #43261]

Culture medium growth

[Ref.: #43261]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43261]

Culture medium growth

[Ref.: #43261]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43261]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43261]			growth	10-30 °C
[Ref.: #67771]			growth	28 °C

[Ref.: #67771]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43261]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43261]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43261]	Type of spore	spore
[Ref.: #43261]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43261]		NaCl		growth	0-1	%(w/v)
[Ref.: #43261]		NaCl	no	growth	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43261]	adipate ChEBI	-	assimilation
[Ref.: #43261]	casein	-	hydrolysis
[Ref.: #43261]	citrate ChEBI	-	assimilation
[Ref.: #43261]	D-glucose ChEBI	-	fermentation
[Ref.: #43261]	D-glucose ChEBI	+	assimilation
[Ref.: #43261]	D-mannitol ChEBI	-	assimilation
[Ref.: #43261]	D-mannose ChEBI	-	assimilation
[Ref.: #43261]	decanoate ChEBI	-	assimilation
[Ref.: #43261]	esculin ChEBI	-	hydrolysis
[Ref.: #43261]	gelatin ChEBI	-	hydrolysis
[Ref.: #43261]	glucose ChEBI	-	fermentation
[Ref.: #43261]	L-arabinose ChEBI	+	assimilation
[Ref.: #43261]	malate ChEBI	+	assimilation
[Ref.: #43261]	maltose ChEBI	-	assimilation
[Ref.: #43261]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43261]	nitrate ChEBI	-	reduction
[Ref.: #43261]	phenylacetate ChEBI	-	assimilation
[Ref.: #43261]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43261]	starch ChEBI	-	hydrolysis
[Ref.: #43261]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43261]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43261]	acetoin ChEBI	no
[Ref.: #43261]	hydrogen sulfide ChEBI	no
[Ref.: #43261]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43261]		acetoin ChEBI	-
[Ref.: #43261]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43261]	acid phosphatase	+	3.1.3.2
[Ref.: #43261]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43261]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43261]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43261]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #43261]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43261]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43261]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43261]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #43261]	beta-glucosidase	+	3.2.1.21
[Ref.: #43261]	beta-glucuronidase	+/-	3.2.1.31
[Ref.: #43261]	catalase	-	1.11.1.6
[Ref.: #43261]	cystine arylamidase	-	3.4.11.3
[Ref.: #43261]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43261]	esterase (C 4)	-
[Ref.: #43261]	esterase Lipase (C 8)	-
[Ref.: #43261]	leucine arylamidase	+	3.4.11.1
[Ref.: #43261]	lipase (C 14)	-
[Ref.: #43261]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43261]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43261]	trypsin	+	3.4.21.4
[Ref.: #43261]	urease	-	3.5.1.5
[Ref.: #43261]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43261]	Sample type/isolated from	rhizosphere soil of cultivated watermelon (Citrullus lanatus)
[Ref.: #43261]	Geographic location (country and/or sea, region)	Hefei, PR China
[Ref.: #43261]	Country	China
[Ref.: #43261]	Country ISO 3 Code	CHN
[Ref.: #43261]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Hefei, Anhui
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX792139 (>99% sequence identity) for Caulobacter rhizosphaerae from Microbeatlas

Aquatic Samples	1486
Soil Samples	2759
Animal Samples	688
Plant Samples	3332
Total Samples	8265

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43261]	16S rRNA gene sequences	KX792139	1450	ENA	2010972 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Caulobacter rhizosphaerae KCTC 52515	GCA_010977555	complete	GenBank	2010972 tax ID	*
[Ref.: #66792]	Caulobacter rhizosphaerae strain KCTC 52515	2010972.4	complete	PATRIC	2010972 tax ID	*
[Ref.: #66792]	Caulobacter rhizosphaerae CGMCC 1.15915	GCA_014645055	scaffold	GenBank	2010972 tax ID	*

[Ref.: #43261]

GC-content

68.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Caulobacter rhizosphaerae KCTC 52515 NCBI: GCA_010977555.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Caulobacter rhizosphaerae KCTC 52515 NCBI: GCA_010977555.1
[Ref.: #69480]	motile	yes	86.515	yes
[Ref.: #69480]	flagellated	no	85.614	no
[Ref.: #69480]	gram-positive	no	97.415	yes
[Ref.: #69480]	anaerobic	no	99.411	no
[Ref.: #69480]	aerobic	yes	93.562	yes
[Ref.: #69480]	halophile	no	96.257	no
[Ref.: #69480]	spore-forming	no	94.196	no
[Ref.: #69480]	thermophile	no	99.25	yes
[Ref.: #69480]	glucose-util	yes	91.036	no
[Ref.: #69480]	glucose-ferment	no	90.814	yes

Availability in culture collections External links

[Ref.: #43261]

Culture collection no.

CGMCC 1.15915, KCTC 52515

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caulobacter soli sp. nov., isolated from soil sampled at Jiri Mountain, Republic of Korea.	Yang Y, Jin CZ, Jin FJ, Li T, Lee JM, Kim CJ, Lee HG, Jin L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004264	2020	*
Phylogeny	Caulobacter rhizosphaerae sp. nov., a stalked bacterium isolated from rhizosphere soil.	Sun LN, Yang ED, Hou XT, Wei JC, Yuan ZX, Wang WY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001860	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43261

Le-Ni Sun, En-Dong Yang, Xue-Ting Hou, Jie-Chao Wei, Zhuo-Xin Yuan and Wei-Yun Wang: Caulobacter rhizosphaerae sp. nov., a stalked bacterium isolated from rhizosphere soil. IJSEM 67: 1771 - 1776 2017 ( DOI 10.1099/ijsem.0.001860 , PubMed 28598303 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Caulobacter rhizosphaerae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Caulobacter rhizosphaerae KCTC 52515

Caulobacter rhizosphaerae KCTC 52515

Change proposal

Change proposal