Oleiagrimonas citrea (JCM 30904, KCCM 43131, MEBiC 09124)

Name: Oleiagrimonas citrea (JCM 30904, KCCM 43131, MEBiC 09124)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140604

Type strain

Culture col. no. JCM 30904 KCCM 43131 MEBiC 09124

NCBI tax ID(s) 1665687

Special Collections JCM Literature strains

Links

Oleiagrimonas citrea JCM 30904 is an aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from tidal flat sediment.

Gram-negative motile rod-shaped colony-forming aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 393260

JCM 30904

@ref 20215

Last LPSN update 2025-12-16 10:03:38

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Rhodanobacteraceae

Genus Oleiagrimonas

Species Oleiagrimonas citrea

Full scientific name Oleiagrimonas citrea Yang et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43265	negative	1.4-3.6 µm	0.4-0.6 µm	rod-shaped
125438	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43265	0.5-1.0 mm	yellow	circular	2-3 days	MA

Culture and growth conditions

Culture medium

@ref	Name	Growth
43265	Marine agar (MA)
43265	MB

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43265	positive	optimum	30	mesophilic
43265	positive	growth	18-38
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
43265	positive	optimum	7.5
43265	positive	growth	4.0-8.5

Physiology and metabolism

Oxygen tolerance

43265

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125438		90.824

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43265	NaCl	positive	growth	0-6 %(w/v)
43265	NaCl	positive	optimum	2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43265	16763 ChEBI	2-oxobutanoate	+	oxidation
43265	30916 ChEBI	2-oxoglutarate	+	oxidation
43265	28644 ChEBI	2-oxopentanoate	+	oxidation
43265	37054 ChEBI	3-hydroxybutyrate	+	oxidation
43265	30089 ChEBI	acetate	-	oxidation
43265	17925 ChEBI	alpha-D-glucose	+	oxidation
43265	73706 ChEBI	bromosuccinate	+	oxidation
43265	15824 ChEBI	D-fructose	+	oxidation
43265	12936 ChEBI	D-galactose	-	oxidation
43265	23652 ChEBI	dextrin	+	oxidation
43265	28066 ChEBI	gentiobiose	-	oxidation
43265	28087 ChEBI	glycogen	+	oxidation
43265	73784 ChEBI	glycyl-l-glutamate	-	oxidation
43265	21217 ChEBI	L-alaninamide	+	oxidation
43265	16977 ChEBI	L-alanine	-	oxidation
43265	73786 ChEBI	L-alanylglycine	-	oxidation
43265	17196 ChEBI	L-asparagine	-	oxidation
43265	29991 ChEBI	L-aspartate	-	oxidation
43265	29985 ChEBI	L-glutamate	+	oxidation
43265	15603 ChEBI	L-leucine	-	oxidation
43265	15729 ChEBI	L-ornithine	-	oxidation
43265	17295 ChEBI	L-phenylalanine	-	oxidation
43265	17203 ChEBI	L-proline	-	oxidation
43265	17115 ChEBI	L-serine	+	oxidation
43265	17306 ChEBI	maltose	+	oxidation
43265	51850 ChEBI	methyl pyruvate	+	oxidation
43265	17632 ChEBI	nitrate	+	reduction
43265	28017 ChEBI	starch	-	hydrolysis
43265	143136 ChEBI	succinamate	+	oxidation
43265	27082 ChEBI	trehalose	+	oxidation
43265	32528 ChEBI	turanose	-	oxidation
43265	53423 ChEBI	tween 40	+	oxidation

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.
43265	2637	amikacin	30 µg
43265	2676	amoxicillin	20 µg
43265	28971	ampicillin	10 µg
43265	28971	ampicillin	10 µg
43265	209807	cefoxitin	30 µg
43265	3517	cefuroxime sodium	30 µg
43265	3542	cephalothin	30 µg
43265	17698	chloramphenicol	30 µg
43265	100241	ciprofloxacin
43265	48947	clavulanic acid	10 µg
43265	43968	meropenem	10 µg
43265	7731	ofloxacin	5 µg
43265	8232	piperacillin
43265	9321	sulbactam	10 µg
43265	9332	sulfamethoxazole	23.75 µg
43265	27902	tetracycline	30 µg
43265	45924	trimethoprim	1.25 µg

Metabolite production

@ref	Chebi-ID	Metabolite
43265	15688 ChEBI	acetoin
43265	16136 ChEBI	hydrogen sulfide
43265	35581 ChEBI	indole
43265	16199 ChEBI	urea

Enzymes

@ref	Value	Activity	Ec
43265	acid phosphatase	+	3.1.3.2
43265	alkaline phosphatase	+	3.1.3.1
43265	alpha-chymotrypsin	-	3.4.21.1
43265	alpha-fucosidase	-	3.2.1.51
43265	alpha-galactosidase	-	3.2.1.22
43265	alpha-glucosidase	+	3.2.1.20
43265	alpha-mannosidase	-	3.2.1.24
43265	arginine dihydrolase	-	3.5.3.6
43265	beta-galactosidase	-	3.2.1.23
43265	beta-glucosidase	+	3.2.1.21
43265	beta-glucuronidase	-	3.2.1.31
43265	catalase	+	1.11.1.6
43265	cystine arylamidase	+	3.4.11.3
43265	cytochrome oxidase	+	1.9.3.1
43265	esterase (C 4)	+
43265	esterase Lipase (C 8)	+
43265	gelatinase	+
43265	leucine arylamidase	+	3.4.11.1
43265	lipase (C 14)	+
43265	lysine decarboxylase	-	4.1.1.18
43265	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43265	naphthol-AS-BI-phosphohydrolase	+
43265	ornithine decarboxylase	-	4.1.1.17
43265	trypsin	+	3.4.21.4
43265	trypsin	-	3.4.21.4
43265	urease	+	3.5.1.5
43265	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43265

Fatty acid	Percentage
C15:0 iso	22.6
10-methyl C16:0 / iso-C17:1ω9c	22.5
C16:0 iso	16
C17:0 iso	10
C15:0 anteiso	3.5
C16:1 iso H	3
C13:0 iso 3OH	2.4
C14:0 iso	1.9
C16:1ω6c / C16:1ω7c	1.9
C16:0	1.3
C12:0 iso 3OH	1.1
C17:0 iso 3OH	1.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
43265	tidal flat sediment	Suncheon Bay, South Korea	Republic of Korea	KOR	Asia
67770	Tidal flat sediment of Suncheon Bay		Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1239525v1 assembly for Oleiagrimonas citrea MEBiC09124	contig	GCA_012395255	1665687.3	8098653000	1665687	76.48

Genome browser: GCA_012395255

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43265	Oleiagrimonas citrea strain MEBic09124 16S ribosomal RNA gene, partial sequence	KP691065	1439		1665687

GC content

@ref	GC-content (mol%)	Method
43265	66.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Oleiagrimonas citrea MEBiC09124
NCBI: GCA_012395255.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	yes
125438	anaerobic	anaerobicⓘ	no	95.11	yes
125438	aerobic	aerobicⓘ	yes	82.71	yes
125438	spore-forming	spore-formingⓘ	no	90.82	no
125438	thermophilic	thermophileⓘ	no	94.70	yes
125438	flagellated	motile2+ⓘ	yes	53.04	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oleiagrimonas citrea sp. nov., a marine bacterium isolated from tidal flat sediment and emended description of the genus Oleiagrimonas Fang et al. 2015 and Oleiagrimonas soli.	Yang SH, Seo HS, Seong CN, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijsem.0.001846	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43265	Sung-Hyun Yang, Hyun-Seok Seo, Chi Nam Seong and Kae Kyoung Kwon: Oleiagrimonas citrea sp. nov., a marine bacterium isolated from tidal flat sediment and emended description of the genus Oleiagrimonas Fang et al. 2015 and Oleiagrimonas soli. IJSEM 67: 1672 - 1675 2017 ( DOI 10.1099/ijsem.0.001846 , PubMed 28211311 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Oleiagrimonas citrea (JCM 30904, KCCM 43131, MEBiC 09124)

Name and taxonomic classification