Name: Polaribacter litorisediminis OITF-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140599

Type strain:

Species: Polaribacter litorisediminis

Strain Designation: OITF-11

Culture col. no.: KCTC 52500, NBRC 112457

Strain history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.

NCBI tax ID(s): 1908341 (species)

Section

Polaribacter litorisediminis OITF-11 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from tidal flat.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Polaribacter*
	Species	**Polaribacter litorisediminis**
	Full Scientific Name (LPSN)	Polaribacter litorisediminis Park et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43222]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43222]	Cell length	0.4-10.0 µm

[Ref.: #43222]	Cell width	0.2-0.6 µm

[Ref.: #43222]	Cell shape	rod-shaped
[Ref.: #43222]	Cell shape	ovoid-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	ovoid-shaped

[Ref.: #43222]	Motility	no

[Ref.: #43222]	Colony size	0.5-1.0 mm
[Ref.: #43222]	Colony color	light orange yellow
[Ref.: #43222]	Colony shape	circular
[Ref.: #43222]	Incubation period	3 days
[Ref.: #43222]	Cultivation medium used	MA

[Ref.: #43222]	Pigment production	yes
[Ref.: #43222]	Pigment name	carotenoid pigments
[Ref.: #43222]	Pigment production	no
[Ref.: #43222]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43222]

Culture medium

Marine agar (MA)

[Ref.: #43222]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #43222]	no	growth	30 °C
[Ref.: #43222]		growth	4-28 °C
[Ref.: #43222]		optimum	25 °C
[Ref.: #67771]		growth	25 °C

[Ref.: #43222]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #43222]		optimum	7.0-8.0
[Ref.: #43222]		growth	6
[Ref.: #43222]	no	growth	5.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43222]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43222]	Type of spore	spore
[Ref.: #43222]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43222]		NaCl		growth	0-5.0	%(w/v)
[Ref.: #43222]		NaCl		optimum	2	%

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43222]	casein	-	hydrolysis
[Ref.: #43222]	cellobiose ChEBI	-	builds acid from
[Ref.: #43222]	D-fructose ChEBI	-	builds acid from
[Ref.: #43222]	D-galactose ChEBI	-	builds acid from
[Ref.: #43222]	D-glucose ChEBI	-	builds acid from
[Ref.: #43222]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43222]	D-mannose ChEBI	-	builds acid from
[Ref.: #43222]	D-ribose ChEBI	-	builds acid from
[Ref.: #43222]	D-sorbose ChEBI	-	builds acid from
[Ref.: #43222]	D-xylose ChEBI	-	builds acid from
[Ref.: #43222]	esculin ChEBI	+	hydrolysis
[Ref.: #43222]	gelatin ChEBI	-	hydrolysis
[Ref.: #43222]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43222]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43222]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43222]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #43222]	lactose ChEBI	-	builds acid from
[Ref.: #43222]	magnesium(2+) ChEBI	+	required for growth
[Ref.: #43222]	maltose ChEBI	-	builds acid from
[Ref.: #43222]	melezitose ChEBI	-	builds acid from
[Ref.: #43222]	melibiose ChEBI	-	builds acid from
[Ref.: #43222]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43222]	nitrate ChEBI	-	reduction
[Ref.: #43222]	raffinose ChEBI	-	builds acid from
[Ref.: #43222]	starch ChEBI	-	hydrolysis
[Ref.: #43222]	sucrose ChEBI	-	builds acid from
[Ref.: #43222]	trehalose ChEBI	-	builds acid from
[Ref.: #43222]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43222]	urea ChEBI	-	hydrolysis
[Ref.: #43222]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43222]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43222]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43222]	cephalothin ChEBI	yes	30	µg (disc)
[Ref.: #43222]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #43222]	gentamicin ChEBI				yes	30	µg (disc)
[Ref.: #43222]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43222]	lincomycin ChEBI	yes	15	µg (disc)
[Ref.: #43222]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #43222]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43222]	oleandomycin ChEBI	yes	15	µg (disc)
[Ref.: #43222]	penicillin g ChEBI				yes	20	Unit (disc)
[Ref.: #43222]	polymyxin b ChEBI				yes	100	Unit (disc)
[Ref.: #43222]	streptomycin ChEBI	yes	50	µg (disc)
[Ref.: #43222]	tetracycline ChEBI				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43222]	acid phosphatase	-	3.1.3.2
[Ref.: #43222]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43222]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43222]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43222]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43222]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43222]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43222]	beta-galactosidase	-	3.2.1.23
[Ref.: #43222]	beta-glucosidase	-	3.2.1.21
[Ref.: #43222]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43222]	catalase	+	1.11.1.6
[Ref.: #43222]	cystine arylamidase	+	3.4.11.3
[Ref.: #43222]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43222]	esterase (C 4)	-
[Ref.: #43222]	esterase Lipase (C 8)	+
[Ref.: #43222]	leucine arylamidase	+	3.4.11.1
[Ref.: #43222]	lipase (C 14)	-
[Ref.: #43222]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43222]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43222]	trypsin	-	3.4.21.4
[Ref.: #43222]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43222]

Fatty acid	Percentage
C15:0 iso	40.9
C15:1 iso G	15.7
C15:0 iso 3OH	10.7
C17:0 iso 3OH	7.1
C15:1ω6c	6
iso-C17:1 l / anteiso-C17:1 B	3.9
C15:1 iso h / C13:0 3OH	3.2
C16:1ω7c / C16:1ω6c	1.8
C13:0 iso	1.6
C16:0 iso 3OH	1.6
C17:1 iso ω9c	1.3

Metadata FA analysis

Reference

[Ref.: #43222]

Fatty acid	Percentage
C15:0 iso	40.3
C15:1 iso G	14.1
C15:0 iso 3OH	10.1
C15:1ω6c	8
C17:0 iso 3OH	6.9
iso-C17:1 l / anteiso-C17:1 B	4.2
C15:1 iso h / C13:0 3OH	2.8
C16:0 iso 3OH	2.1
C16:1ω7c / C16:1ω6c	2
C13:0 iso	1.8
C16:1 iso H	1.2
C17:1 iso ω9c	1.2

Metadata FA analysis

Reference

[Ref.: #43222]

Fatty acid	Percentage
C15:0 iso	37.2
C15:1 iso G	15
C15:1ω6c	10.2
C15:0 iso 3OH	9.5
C17:0 iso 3OH	5
iso-C17:1 l / anteiso-C17:1 B	4.3
C15:1 iso h / C13:0 3OH	2.6
C16:1ω7c / C16:1ω6c	2.4
C16:0 iso 3OH	2.1
C13:0 iso	2
C16:1 iso H	1.4
C14:0 iso	1.4
C17:1 iso ω9c	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43222]	Sample type/isolated from	tidal flat
[Ref.: #43222]	Geographic location (country and/or sea, region)	Oido island on the Yellow Sea, South Korea
[Ref.: #43222]	Country	Republic of Korea
[Ref.: #43222]	Country ISO 3 Code	KOR
[Ref.: #43222]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tidal flat
[Ref.: #67771]	Geographic location (country and/or sea, region)	Oido Island, Yellow Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43222]	16S rRNA gene sequences	KX982846	1440	ENA	1908341 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Polaribacter litorisediminis OITF-11	GCA_019968605	complete	GenBank	1908341 tax ID	*

[Ref.: #43222]	GC-content	32.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	32.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Polaribacter litorisediminis OITF-11 NCBI: GCA_019968605.1
[Ref.: #69480]	flagellated	no	94.242	yes
[Ref.: #69480]	gram-positive	no	97.96	yes
[Ref.: #69480]	anaerobic	no	99.063	yes
[Ref.: #69480]	aerobic	yes	85.131	no
[Ref.: #69480]	halophile	no	69.92	no
[Ref.: #69480]	spore-forming	no	96.314	yes
[Ref.: #69480]	motile	no	89.838	yes
[Ref.: #69480]	thermophile	no	98.855	yes
[Ref.: #69480]	glucose-util	yes	86.82	no
[Ref.: #69480]	glucose-ferment	no	89.436	no

Availability in culture collections External links

[Ref.: #43222]

Culture collection no.

KCTC 52500, NBRC 112457

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polaribacter litorisediminis sp. nov., isolated from a tidal flat.	Park S, Yoon SY, Ha MJ, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001919	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43222

Sooyeon Park, Sun Young Yoon, Min-Ji Ha and Jung-Hoon Yoon: Polaribacter litorisediminis sp. nov., isolated from a tidal flat. IJSEM 67: 2036 - 2042 2017 ( DOI 10.1099/ijsem.0.001919 , PubMed 28665265 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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