Name: Marivirga harenae JK11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140594

Type strain:

Species: Marivirga harenae

Strain Designation: JK11

Culture col. no.: NCIMB 1429, NBRC 15981

NCBI tax ID(s): 2010992 (species)

Section

Marivirga harenae JK11 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from brown sand.

colony-forming
Gram-negative
motile
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Marivirgaceae*
	Genus	*Marivirga*
	Species	**Marivirga harenae**
	Full Scientific Name (LPSN)	Marivirga harenae Muramatsu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43226]	Gram stain	negative

[Ref.: #43226]	Cell length	2.5-17 µm

[Ref.: #43226]	Cell width	0.4-0.6 µm

[Ref.: #43226]	Cell shape	rod-shaped

[Ref.: #43226]	Motility	yes

[Ref.: #43226]	Flagellum arrangement	gliding

[Ref.: #43226]	Colony size	2-4 mm
[Ref.: #43226]	Colony color	orange
[Ref.: #43226]	Colony shape	circular
[Ref.: #43226]	Incubation period	3 days
[Ref.: #43226]	Cultivation medium used	MA2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43226]

Culture medium

MA2216

[Ref.: #43226]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43226]			optimum	30 °C
[Ref.: #43226]			growth	5-35 °C

[Ref.: #43226]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43226]			optimum	7-8
[Ref.: #43226]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43226]

Oxygen tolerance

obligate aerobe

[Ref.: #43226]	Type of spore	endospore
[Ref.: #43226]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43226]		NaCl		growth	5-10	%(w/v)
[Ref.: #43226]		NaCl		optimum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43226]	2-oxogluconate	+/-	builds acid from
[Ref.: #43226]	3-O-methyl-D-glucose ChEBI	+	builds acid from
[Ref.: #43226]	5-dehydro-D-gluconate ChEBI	+/-	builds acid from
[Ref.: #43226]	adipate ChEBI	+/-	assimilation
[Ref.: #43226]	agar ChEBI	-	degradation
[Ref.: #43226]	alginate ChEBI	-	degradation
[Ref.: #43226]	ammonium sulfate ChEBI	-	nitrogen source
[Ref.: #43226]	amygdalin ChEBI	+	builds acid from
[Ref.: #43226]	arbutin ChEBI	+	builds acid from
[Ref.: #43226]	carboxymethylcellulose ChEBI	-	degradation
[Ref.: #43226]	casamino acids	+	nitrogen source
[Ref.: #43226]	casein	+	degradation
[Ref.: #43226]	cellobiose ChEBI	-	degradation
[Ref.: #43226]	cellobiose ChEBI	+	builds acid from
[Ref.: #43226]	chitin ChEBI	-	degradation
[Ref.: #43226]	D-mannitol ChEBI	+/-	assimilation
[Ref.: #43226]	dna ChEBI	-	degradation
[Ref.: #43226]	esculin ChEBI	+	hydrolysis
[Ref.: #43226]	esculin ChEBI	+	builds acid from
[Ref.: #43226]	fructose ChEBI	+/-	builds acid from
[Ref.: #43226]	gelatin ChEBI	-	hydrolysis
[Ref.: #43226]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43226]	glucose ChEBI	+	builds acid from
[Ref.: #43226]	glycerol ChEBI	+/-	builds acid from
[Ref.: #43226]	glycogen ChEBI	+	builds acid from
[Ref.: #43226]	inulin ChEBI	-	degradation
[Ref.: #43226]	inulin ChEBI	+/-	builds acid from
[Ref.: #43226]	L-tyrosine ChEBI	-	degradation
[Ref.: #43226]	lactose ChEBI	+/-	builds acid from
[Ref.: #43226]	maltose ChEBI	+	builds acid from
[Ref.: #43226]	maltose ChEBI	-	assimilation
[Ref.: #43226]	mannose ChEBI	-	builds acid from
[Ref.: #43226]	melezitose ChEBI	+	builds acid from
[Ref.: #43226]	melibiose ChEBI	+/-	builds acid from
[Ref.: #43226]	methyl alpha-D-mannoside ChEBI	+/-	builds acid from
[Ref.: #43226]	N-acetylglucosamine ChEBI	+/-	assimilation
[Ref.: #43226]	N-acetylglucosamine ChEBI	+/-	builds acid from
[Ref.: #43226]	nitrate ChEBI	-	reduction
[Ref.: #43226]	peptone	+	nitrogen source
[Ref.: #43226]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43226]	raffinose ChEBI	+/-	builds acid from
[Ref.: #43226]	salicin ChEBI	+	builds acid from
[Ref.: #43226]	sodium L-glutamate ChEBI	+	nitrogen source
[Ref.: #43226]	sodium nitrate ChEBI	-	nitrogen source
[Ref.: #43226]	starch ChEBI	+	degradation
[Ref.: #43226]	starch ChEBI	+	builds acid from
[Ref.: #43226]	sucrose ChEBI	+	builds acid from
[Ref.: #43226]	trehalose ChEBI	+	builds acid from
[Ref.: #43226]	turanose ChEBI	+	builds acid from
[Ref.: #43226]	tween 80 ChEBI	-	degradation
[Ref.: #43226]	urea ChEBI	-	nitrogen source
[Ref.: #43226]	xylitol ChEBI	+/-	builds acid from
[Ref.: #43226]	yeast extract	+/-	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43226]		hydrogen sulfide ChEBI	no
[Ref.: #43226]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43226]	acid phosphatase	+	3.1.3.2
[Ref.: #43226]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43226]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43226]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43226]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #43226]	beta-glucosidase	-	3.2.1.21
[Ref.: #43226]	catalase	+/-	1.11.1.6
[Ref.: #43226]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43226]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43226]	esterase (C 4)	+
[Ref.: #43226]	esterase Lipase (C 8)	+
[Ref.: #43226]	leucine arylamidase	+	3.4.11.1
[Ref.: #43226]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43226]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43226]

Fatty acid	Percentage
C15:0 iso	25.2
C15:1 iso G	19.3
C16:1ω7c	16
C17:0 iso 3OH	8.2
C16:0 iso 3OH	4.8
C15:0 anteiso	4.1
C16:0 iso	3.5
C15:0 iso 3OH	3.5
C16:0 3OH	3
C16:0	2.5
C16:1ω5c	2.1
C14:0 iso	1.8
C16:1 iso G	1.4
C15:1 anteiso A	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43226]	Sample type/isolated from	brown sand
[Ref.: #43226]	Geographic location (country and/or sea, region)	Moreton Bay, Queensland, Australia
[Ref.: #43226]	Country	Australia
[Ref.: #43226]	Country ISO 3 Code	AUS
[Ref.: #43226]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB078071 (>99% sequence identity) for Marivirga harenae from Microbeatlas

Aquatic Samples	117
Soil Samples	3
Animal Samples
Plant Samples	2
Total Samples	122

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43226]	16S rRNA gene sequences	AB078071	1476	ENA	2010992 tax ID

[Ref.: #43226]

GC-content

35.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43226]

Culture collection no.

NCIMB 1429, NBRC 15981

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Flexibacter tractuosus NBRC 15981T as Marivirga harenae sp. nov. in the family Flammeovirgaceae.	Muramatsu Y, Kamakura Y, Takahashi M, Nakagawa Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001890	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43226

Yuki Muramatsu, Yuki Kamakura, Mai Takahashi and Yasuyoshi Nakagawa: Reclassification of Flexibacter tractuosus NBRC 15981 as Marivirga harenae sp. nov. in the family Flammeovirgaceae. IJSEM 67: 1937 - 1942 2017 ( DOI 10.1099/ijsem.0.001890 , PubMed 28646633 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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