Aquimarina rubra (KCTC 52274, MCCC 1H00142, SS2-9)

Name: Aquimarina rubra (KCTC 52274, MCCC 1H00142, SS2-9)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140593

Type strain

Strain Designation SS2-9

Culture col. no. KCTC 52274 MCCC 1H00142 SS2-9

NCBI tax ID(s) 1920033

Special Collections KCTC Literature strains

History <- Zongjun Du, Shandong Univ.

Links

Aquimarina rubra SS2-9 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from sediment collected from a pond for sea cucumber culture.

Gram-negative rod-shaped colony-forming facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 26290

KCTC 52274

@ref 20215

Last LPSN update 2026-02-09 11:33:40

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Aquimarina

Species Aquimarina rubra

Full scientific name Aquimarina rubra Han et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
43262	negative	1.5-6.0 µm	0.3-0.5 µm	rod-shaped
67771				rod-shaped
67771	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43262	1-2 mm	red	circular	3 days	2216E agar

Pigmentation

@ref	Production	Name
43262		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
43262	2216E agar

Culture temp

@ref	Growth	Type	Temperature (°C)
43262	positive	optimum	28
43262	positive	growth	10-37
67771	positive	growth	25-30

Culture pH

@ref	Ability	Type	PH	PH range
43262	positive	optimum	7.0-7.5
43262	positive	growth	6.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43262	facultative anaerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43262	NaCl	positive	growth	0.5-6.0 %(w/v)
43262	NaCl	positive	optimum	2 %(w/v)

Observation

67771

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43262	30089 ChEBI	acetate	+	carbon source
43262	13705 ChEBI	acetoacetate	+	carbon source
43262	2509 ChEBI	agar	-	hydrolysis
43262	58187 ChEBI	alginate	+	hydrolysis
43262	17925 ChEBI	alpha-D-glucose	+	carbon source
43262	27613 ChEBI	amygdalin	+	builds acid from
43262	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43262	17057 ChEBI	cellobiose	+	builds acid from
43262	17057 ChEBI	cellobiose	+	carbon source
43262	16947 ChEBI	citrate	+	carbon source
43262	15824 ChEBI	D-fructose	+	carbon source
43262	15824 ChEBI	D-fructose	-	builds acid from
43262	17634 ChEBI	D-glucose	+	builds acid from
43262	65327 ChEBI	D-xylose	+	builds acid from
43262	23652 ChEBI	dextrin	+	carbon source
43262	16991 ChEBI	dna	-	hydrolysis
43262	4853 ChEBI	esculin	+	builds acid from
43262	28087 ChEBI	glycogen	+	builds acid from
43262	30849 ChEBI	L-arabinose	-	builds acid from
43262	17306 ChEBI	maltose	+	builds acid from
43262	17306 ChEBI	maltose	+	carbon source
43262	28037 ChEBI	N-acetylgalactosamine	+	carbon source
43262	17632 ChEBI	nitrate	-	reduction
43262		potassium 2-dehydro-D-gluconate	+	builds acid from
43262		potassium 5-dehydro-D-gluconate	+	builds acid from
43262	16634 ChEBI	raffinose	+	builds acid from
43262	16634 ChEBI	raffinose	+	carbon source
43262		sodium(+)	+	required for growth
43262	28017 ChEBI	starch	-	hydrolysis
43262	17992 ChEBI	sucrose	-	builds acid from
43262	27082 ChEBI	trehalose	+	builds acid from
43262	53424 ChEBI	tween 20	+	hydrolysis
43262	53423 ChEBI	tween 40	+	hydrolysis
43262	53425 ChEBI	tween 60	+	hydrolysis
43262	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43262	31168	acetylspiramycin	30 µg
43262	28971	ampicillin	10 µg
43262	204928	cefotaxime	30 µg
43262	29007	ceftriaxone	30 µg
43262	17698	chloramphenicol	30 µg
43262	3745	clindamycin	30 µg
43262	48923	erythromycin	15 µg
43262	17833	gentamicin		10 µg
43262	6104	kanamycin		30 µg
43262	6472	lincomycin	2 µg
43262	100147	nalidixic acid		30 µg
43262	7507	neomycin		30 µg
43262	100246	norfloxacin		10 µg
43262	7731	ofloxacin	5 µg
43262	18208	penicillin g	10 µg
43262	28077	rifampicin	5 µg
43262	17076	streptomycin		10 µg
43262	27902	tetracycline		30 µg
43262	28864	tobramycin		10 µg
43262	28001	vancomycin	30 µg

Metabolite production

@ref	Chebi-ID	Metabolite
43262	15688 ChEBI	acetoin
43262	16136 ChEBI	hydrogen sulfide
43262	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
43262	15688 ChEBI	acetoin	+

Enzymes

@ref	Value	Activity	Ec
43262	acid phosphatase	+	3.1.3.2
43262	alkaline phosphatase	+	3.1.3.1
43262	alpha-chymotrypsin	+	3.4.21.1
43262	alpha-galactosidase	-	3.2.1.22
43262	alpha-glucosidase	-	3.2.1.20
43262	alpha-mannosidase	-	3.2.1.24
43262	amylase	+
43262	arginine dihydrolase	-	3.5.3.6
43262	beta-galactosidase	-	3.2.1.23
43262	beta-glucosidase	-	3.2.1.21
43262	beta-glucuronidase	-	3.2.1.31
43262	catalase	+	1.11.1.6
43262	cystine arylamidase	+	3.4.11.3
43262	cytochrome oxidase	-	1.9.3.1
43262	esterase (C 4)	-
43262	esterase Lipase (C 8)	+
43262	gelatinase	+
43262	leucine arylamidase	+	3.4.11.1
43262	lipase (C 14)	-
43262	lysine decarboxylase	-	4.1.1.18
43262	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43262	naphthol-AS-BI-phosphohydrolase	-
43262	ornithine decarboxylase	-	4.1.1.17
43262	trypsin	+	3.4.21.4
43262	tryptophan deaminase	-	4.1.99.1
43262	urease	-	3.5.1.5
43262	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43262

Fatty acid	Percentage
C15:0 iso	18
C17:0 iso 3OH	15.9
C15:0	14.7
C15:1 iso G	11

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#Sediment
#Host	#Invertebrates (Other)	#Echinodermata

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43262	sediment collected from a pond for sea cucumber culture	Rongcheng, Shandong province, China	China	CHN	Asia	36	122 36/122
67771	From sediment, a pond for sea cucumber culture	Rongcheng, Shandong province	China	CHN	Asia	36.9	122.233 36.9/122.233

Taxonmaps

69479

Global distribution of 16S sequence KX262846 (>99% sequence identity) for Aquimarina rubra subclade from Microbeatlas

Aquatic Samples	45
Soil Samples
Animal Samples	2
Plant Samples
Total Samples	47

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268430v1 assembly for Aquimarina rubra KCTC 52274	scaffold	GCA_042684305	1920033	54.65

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43262	Aquimarina rubra strain SS2-9 16S ribosomal RNA gene, partial sequence	KX262846	1450		1920033

GC content

67771

GC-content (mol%)34.5

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquimarina rubra sp. nov., isolated from sediment of a sea cucumber culture pond.	Han JR, Fang DB, Xia HF, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001889	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43262	Ji-Ru Han, Dong-Bo Fang, Hai-Feng Xia, Guan-Jun Chen and Zong-Jun Du: Aquimarina rubra sp. nov., isolated from sediment of a sea cucumber culture pond. IJSEM 67: 1932 - 1936 2017 ( DOI 10.1099/ijsem.0.001889 , PubMed 28598301 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aquimarina rubra (KCTC 52274, MCCC 1H00142, SS2-9)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042684305

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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