Name: Saccharopolyspora spongiae DSM 103218
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140589

Type strain:

Species: Saccharopolyspora spongiae

Culture col. no.: DSM 103218, NRRL B-65384, CMAA 1452

NCBI tax ID(s): 1847949 (species)

Section

Saccharopolyspora spongiae DSM 103218 is an aerobe, spore-forming, mesophilic bacterium that builds a substrate mycelium and was isolated from marine sponge Scopalina ruetzleri.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora spongiae**
	Full Scientific Name (PNU)	Saccharopolyspora spongiae Souza et al. 2017

Information on morphological and physiological properties Morphology

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Gram stain

positive

[Ref.: #43230]	Colony color	pale yellow
[Ref.: #43230]	Cultivation medium used	ISP2 medium

[Ref.: #43230]	Pigment production	no
[Ref.: #43230]	Pigment name	Diffusible pigments

[Ref.: #43230]	Multicellular complex forming ability	yes
[Ref.: #43230]	Multicellular complex name	substrate mycelium
[Ref.: #43230]	Multicellular complex further description	extensively branched substrate mycelium

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP2 medium

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Culture medium growth

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Culture medium

potato-dextrose agar

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Culture medium growth

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Culture medium

Czapek's agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43230]			optimum	25 °C
[Ref.: #43230]			growth	15-30 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #43230]			optimum	7
[Ref.: #43230]			growth	6.0-10.0	alkaliphile

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #43230]	Spore description	smooth-surfaced spores on ISP2 medium
[Ref.: #43230]	Type of spore	spore
[Ref.: #43230]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43230]		NaCl		growth	0-7	%(w/v)
[Ref.: #43230]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43230]	adenine ChEBI	-	degradation
[Ref.: #43230]	casein	+	degradation
[Ref.: #43230]	cellobiose ChEBI	+	builds acid from
[Ref.: #43230]	cellulose ChEBI	+	degradation
[Ref.: #43230]	chitin ChEBI	+	degradation
[Ref.: #43230]	D-arabinose ChEBI	+	carbon source
[Ref.: #43230]	D-arabinose ChEBI	+	builds acid from
[Ref.: #43230]	D-fructose ChEBI	+	builds acid from
[Ref.: #43230]	D-galactose ChEBI	+	carbon source
[Ref.: #43230]	D-galactose ChEBI	+	builds acid from
[Ref.: #43230]	D-mannose ChEBI	-	carbon source
[Ref.: #43230]	D-rhamnose ChEBI	-	builds acid from
[Ref.: #43230]	D-ribose ChEBI	-	carbon source
[Ref.: #43230]	D-ribose ChEBI	+	builds acid from
[Ref.: #43230]	D-xylose ChEBI	-	carbon source
[Ref.: #43230]	dextrin ChEBI	-	carbon source
[Ref.: #43230]	esculin ChEBI	+	degradation
[Ref.: #43230]	hypoxanthine ChEBI	+	degradation
[Ref.: #43230]	L-arabinose ChEBI	-	carbon source
[Ref.: #43230]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #43230]	L-glutamate ChEBI	-	nitrogen source
[Ref.: #43230]	L-histidine ChEBI	+	nitrogen source
[Ref.: #43230]	L-lysine ChEBI	+	nitrogen source
[Ref.: #43230]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43230]	L-serine ChEBI	+	nitrogen source
[Ref.: #43230]	L-valine ChEBI	+	nitrogen source
[Ref.: #43230]	lactose ChEBI	-	carbon source
[Ref.: #43230]	maltose ChEBI	+	carbon source
[Ref.: #43230]	maltose ChEBI	+	builds acid from
[Ref.: #43230]	raffinose ChEBI	-	carbon source
[Ref.: #43230]	sorbitol ChEBI	+	carbon source
[Ref.: #43230]	starch ChEBI	+	degradation
[Ref.: #43230]	tween 80 ChEBI	+	degradation
[Ref.: #43230]	tyrosine ChEBI	+	degradation
[Ref.: #43230]	tyrosine ChEBI	+	carbon source
[Ref.: #43230]	urea ChEBI	-	degradation
[Ref.: #43230]	uric acid ChEBI	+	degradation
[Ref.: #43230]	xanthine ChEBI	+	degradation
[Ref.: #43230]	xylan ChEBI	+	degradation
[Ref.: #43230]	xylitol ChEBI	+	carbon source
[Ref.: #43230]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43230]	acid phosphatase	+	3.1.3.2
[Ref.: #43230]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43230]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43230]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43230]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43230]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43230]	beta-galactosidase	+	3.2.1.23
[Ref.: #43230]	beta-glucosidase	+	3.2.1.21
[Ref.: #43230]	beta-glucosidase	-	3.2.1.21
[Ref.: #43230]	chymotrypsin	+	3.4.4.5
[Ref.: #43230]	cystine arylamidase	+	3.4.11.3
[Ref.: #43230]	esterase (C 4)	+
[Ref.: #43230]	esterase Lipase (C 8)	+
[Ref.: #43230]	leucine arylamidase	+	3.4.11.1
[Ref.: #43230]	lipase (C 14)	-
[Ref.: #43230]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43230]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43230]	trypsin	+	3.4.21.4
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C16:0 iso	26.24
C15:0 iso	20.11
C17:0 iso	13.26
10-methyl C16:0 / iso-C17:1ω9c	11.29
C17:0 anteiso	10.65

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43230]	Sample type/isolated from	marine sponge Scopalina ruetzleri
[Ref.: #43230]	Sampling date	2013-08
[Ref.: #43230]	Geographic location (country and/or sea, region)	Saint Peter and Saint Paul archipelago in the Atlantic Ocean, Brazil
[Ref.: #43230]	Country	Brazil
[Ref.: #43230]	Country ISO 3 Code	BRA
[Ref.: #43230]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43230]	16S rRNA gene sequences	KX037095	1486	ENA	1847949 tax ID

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GC-content

64.8 mol%

Thermal denaturation, fluorometry

Availability in culture collections External links

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Culture collection no.

DSM 103218, NRRL B-65384, CMAA 1452

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora spongiae sp. nov., a novel actinomycete isolated from the marine sponge Scopalina ruetzleri (Wiedenmayer, 1977).	Souza DT, Silva FSPD, Silva LJD, Crevelin EJ, Moraes LAB, Zucchi TD, Melo IS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001912	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43230

Danilo Tosta Souza, Fábio Sérgio Paulino da Silva, Leonardo José da Silva, Eduardo José Crevelin, Luiz Alberto Beraldo Moraes, Tiago Domingues Zucchi and Itamar Soares Melo: Saccharopolyspora spongiae sp. nov., a novel actinomycete isolated from the marine sponge Scopalina ruetzleri (Wiedenmayer, 1977). IJSEM 67: 2019 - 2025 2017 ( DOI 10.1099/ijsem.0.001912 , PubMed 28632117 )

* These data were automatically processed and therefore are not curated

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