Name: Calidifontibacter terrae R161
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140587

Type strain:

Species: Calidifontibacter terrae

Strain Designation: R161

Culture col. no.: JCM 31558, KACC 18906, KEMB 9005-404

Strain history: J. Kim; Kyonggi Univ., South Korea; R161.

NCBI tax ID(s): 1813472 (species)

Section

Calidifontibacter terrae R161 is an aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from soil samples.

coccus-shaped
colony-forming
Gram-positive
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Dermacoccaceae*
	Genus	*Calidifontibacter*
	Species	**Calidifontibacter terrae**
	Full Scientific Name (LPSN)	Calidifontibacter terrae Dahal et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43248]	Gram stain	positive

[Ref.: #43248]	Cell length	1.2-1.4 µm

[Ref.: #43248]	Cell width	0.4-0.8 µm

[Ref.: #43248]	Cell shape	coccus-shaped

[Ref.: #43248]	Motility	no

[Ref.: #43248]	Colony size	1-2 mm
[Ref.: #43248]	Colony color	creamish white
[Ref.: #43248]	Colony shape	circular
[Ref.: #43248]	Incubation period	5 days
[Ref.: #43248]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

veal infusion

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

BHI

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Culture medium

MHA

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Culture medium

ISP2

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Culture medium

MacConkey agar

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Culture medium

LBA

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Culture medium

Czapek-Dox

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Culture medium growth

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Culture medium

PDA

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Culture medium growth

		Temperature
[Ref.: #43248]	optimum	20-32 °C
[Ref.: #43248]	growth	10-37 °C
[Ref.: #67770]	growth	28 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43248]			optimum	7.0-8.5
[Ref.: #43248]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #43248]	Type of spore	spore
[Ref.: #43248]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43248]		NaCl		optimum	0	%
[Ref.: #43248]		NaCl		maximum	4	%

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Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43248]	2-oxogluconate	-	builds acid from
[Ref.: #43248]	4-nitrophenyl beta-D-galactopyranoside hydrolysate	-	builds acid from
[Ref.: #43248]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43248]	arabinose ChEBI	-	carbon source
[Ref.: #43248]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43248]	casein	+	hydrolysis
[Ref.: #43248]	cellulose ChEBI	+	carbon source
[Ref.: #43248]	chitin ChEBI	-	hydrolysis
[Ref.: #43248]	D-glucose ChEBI	+	builds acid from
[Ref.: #43248]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43248]	D-mannose ChEBI	+	builds acid from
[Ref.: #43248]	D-ribose ChEBI	-	builds acid from
[Ref.: #43248]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43248]	galactose ChEBI	+	carbon source
[Ref.: #43248]	gelatin ChEBI	+	degradation
[Ref.: #43248]	glucose ChEBI	-	fermentation
[Ref.: #43248]	glucose ChEBI	+	carbon source
[Ref.: #43248]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43248]	L-alanine ChEBI	+	builds acid from
[Ref.: #43248]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43248]	L-fucose ChEBI	-	builds acid from
[Ref.: #43248]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43248]	L-serine ChEBI	+	builds acid from
[Ref.: #43248]	maltose ChEBI	+	builds acid from
[Ref.: #43248]	melibiose ChEBI	-	builds acid from
[Ref.: #43248]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43248]	nitrate ChEBI	+	reduction
[Ref.: #43248]	potassium gluconate ChEBI	+/-	builds acid from
[Ref.: #43248]	raffinose ChEBI	+	carbon source
[Ref.: #43248]	rhamnose ChEBI	+	carbon source
[Ref.: #43248]	ribose ChEBI	-	carbon source
[Ref.: #43248]	starch ChEBI	-	hydrolysis
[Ref.: #43248]	sucrose ChEBI	+	carbon source
[Ref.: #43248]	sucrose ChEBI	+	builds acid from
[Ref.: #43248]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43248]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43248]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43248]	tyrosine ChEBI	-	hydrolysis
[Ref.: #43248]	xanthine ChEBI	-	hydrolysis
[Ref.: #43248]	xylose ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43248]		acetoin ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43248]		acetoin ChEBI	-
[Ref.: #43248]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43248]	acid phosphatase	+	3.1.3.2
[Ref.: #43248]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43248]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43248]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43248]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43248]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43248]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43248]	beta-galactosidase	-	3.2.1.23
[Ref.: #43248]	beta-glucosidase	-	3.2.1.21
[Ref.: #43248]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43248]	catalase	+	1.11.1.6
[Ref.: #43248]	cystine arylamidase	+	3.4.11.3
[Ref.: #43248]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43248]	DNase	-
[Ref.: #43248]	esterase (C 4)	+
[Ref.: #43248]	esterase Lipase (C 8)	+
[Ref.: #43248]	leucine arylamidase	+	3.4.11.1
[Ref.: #43248]	lipase (C 14)	+
[Ref.: #43248]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43248]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43248]	trypsin	-	3.4.21.4
[Ref.: #43248]	valine arylamidase	+
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Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43248]

Fatty acid	Percentage
C16:0 iso	31.4
C17:0 anteiso	15.1
C16:1 iso H	13.8
C17:1 anteiso ω9c	8.1
C15:0 iso	7.7
C17:1 iso ω9c / C16:0 10-methyl	7.6
C15:0 anteiso	3.7
C17:0 iso	1.9
10-methyl C17:0	1.7
C17:1ω8c	1.5
C15:1ω6c	1.2
C17:0	1
C16:1ω7c / C16:1ω6c	0.8
C15:1 iso h / C13:0 3OH	0.8
C14:0 iso	0.5
C18:0 iso	0.4
C16:0	0.4
C18:1 iso H	0.3
C18:2ω6.9c / anteiso-C18:0	0.3
cyclo-C17:0	0.3
C18:1ω9c	0.3
C15:0 2OH	0.3
C13:0 anteiso	0.2
C17:1 iso I /C17:1 anteiso B	0.2
C14:0	0.1
C14:1ω5c	0.1
C13:0 iso	0.1
C19:1ω6c / cyclo-C19:0	0.1
C10:0	0.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43248]	Sample type/isolated from	soil samples
[Ref.: #43248]	Geographic location (country and/or sea, region)	Hwaseong, Gyeonggi-Do, South Korea
[Ref.: #43248]	Country	Republic of Korea
[Ref.: #43248]	Country ISO 3 Code	KOR
[Ref.: #43248]	Continent	Asia
[Ref.: #43248]	Geographic location	37.0000°/126.0000°

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hwaseong
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence KU881047 (>99% sequence identity) for Calidifontibacter terrae subclade from Microbeatlas

Aquatic Samples	106
Soil Samples	89
Animal Samples	535
Plant Samples	34
Total Samples	764

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43248]	16S rRNA gene sequences	KU881047	1463	ENA	1813472 tax ID

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GC-content

73.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

JCM 31558, KACC 18906, KEMB 9005-404

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Calidifontibacter terrae sp. nov., an actinomycete isolated from soil, with potential applications in cosmetics.	Dahal RH, Shim DS, Kim JY, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001893	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43248

Ram Hari Dahal, Dong Seop Shim, Joon Young Kim and Jaisoo Kim: Calidifontibacter terrae sp. nov., an actinomycete isolated from soil, with potential applications in cosmetics. IJSEM 67: 1925 - 1931 2017 ( DOI 10.1099/ijsem.0.001893 , PubMed 28629492 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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