Nesterenkonia cremea (LMG 29100, KCTC 39636, CGMCC 1.15388)

Name: Nesterenkonia cremea (LMG 29100, KCTC 39636, CGMCC 1.15388)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140586

Type strain

Strain Designation 10C

Culture col. no. LMG 29100 KCTC 39636 CGMCC 1.15388 10C

NCBI tax ID(s) 1882340

Special Collections KCTC Literature strains

History KCTC <- SVV Reddy

Links

Nesterenkonia cremea 10C is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from sediment sample.

Gram-positive rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 272305

LMG 29100,KCTC 39636

@ref 20215

Last LPSN update 2026-05-29 08:39:45

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Nesterenkonia

Species Nesterenkonia cremea

Full scientific name Nesterenkonia cremea Sultanpuram et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
43224	positive	2.1-3.6 µm	0.5-0.6 µm	rod-shaped
125438						91

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43224	0.5-1.0 mm	cream	circular	3 days	Marine agar

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
43224	positive	optimum	37
43224	positive	growth	10-55
67771	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
43224	positive	optimum	7.5-8.0
43224	positive	growth	7.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43224	aerobe
67771	aerobe
125439	facultative anaerobe	90.628

Spore formation

@ref	Type of spore	Spore formation	Confidence
43224	endospore
125439			98.024

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43224	NaCl	positive	optimum	5-6 %
43224	NaCl	positive	growth	2-11 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43224	31206 ChEBI	ammonium chloride	+	nitrogen source
43224	22599 ChEBI	arabinose	+	carbon source
43224	22599 ChEBI	arabinose	-	builds acid from
43224	22599 ChEBI	arabinose	-	builds gas from
43224	35391 ChEBI	aspartate	-	nitrogen source
43224	17057 ChEBI	cellobiose	+	builds acid from
43224	17057 ChEBI	cellobiose	+	builds gas from
43224	16024 ChEBI	D-mannose	+	carbon source
43224	28757 ChEBI	fructose	+	builds acid from
43224	28757 ChEBI	fructose	+	builds gas from
43224	28260 ChEBI	galactose	-	carbon source
43224	5291 ChEBI	gelatin	+	hydrolysis
43224	17234 ChEBI	glucose	+	builds acid from
43224	17234 ChEBI	glucose	+	builds gas from
43224	29987 ChEBI	glutamate	+	nitrogen source
43224	15428 ChEBI	glycine	+	nitrogen source
43224	15443 ChEBI	inulin	+	builds acid from
43224	15443 ChEBI	inulin	+	builds gas from
43224	17716 ChEBI	lactose	+	carbon source
43224	17716 ChEBI	lactose	-	builds acid from
43224	17716 ChEBI	lactose	-	builds gas from
43224	17306 ChEBI	maltose	+	carbon source
43224	17306 ChEBI	maltose	-	builds acid from
43224	17306 ChEBI	maltose	-	builds gas from
43224	29864 ChEBI	mannitol	+	carbon source
43224	29864 ChEBI	mannitol	-	builds acid from
43224	29864 ChEBI	mannitol	-	builds gas from
43224	37684 ChEBI	mannose	+	builds acid from
43224	37684 ChEBI	mannose	+	builds gas from
43224	28053 ChEBI	melibiose	-	carbon source
43224	17268 ChEBI	myo-inositol	+	carbon source
43224	17268 ChEBI	myo-inositol	-	builds acid from
43224	17268 ChEBI	myo-inositol	-	builds gas from
43224	17632 ChEBI	nitrate	+	nitrogen source
43224	16301 ChEBI	nitrite	-	nitrogen source
43224	16634 ChEBI	raffinose	-	carbon source
43224	26546 ChEBI	rhamnose	-	carbon source
43224	17814 ChEBI	salicin	-	carbon source
43224	30911 ChEBI	sorbitol	-	carbon source
43224	28017 ChEBI	starch	-	hydrolysis
43224	17992 ChEBI	sucrose	+	builds acid from
43224	17992 ChEBI	sucrose	+	builds gas from
43224	27082 ChEBI	trehalose	-	carbon source
43224	18186 ChEBI	tyrosine	+	nitrogen source
43224	16199 ChEBI	urea	+	nitrogen source
43224	18222 ChEBI	xylose	+	carbon source
43224	18222 ChEBI	xylose	-	builds acid from
43224	18222 ChEBI	xylose	-	builds gas from

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43224	2637	amikacin	30 µg
43224	28971	ampicillin	10 µg
43224	17698	chloramphenicol	30 µg
43224	100241	ciprofloxacin		5 µg
43224	48923	erythromycin	15 µg
43224	17833	gentamicin	101 µg
43224	6104	kanamycin		30 µg
43224	100147	nalidixic acid		30 µg
43224	17334	penicillin	10 µg
43224	17076	streptomycin	10 µg
43224	27902	tetracycline	30 µg
43224	28001	vancomycin	30 µg

Enzymes

@ref	Value	Activity	Ec
43224	catalase	+	1.11.1.6
43224	cytochrome oxidase	+	1.9.3.1
43224	gelatinase	+

Fatty acid profile

Metadata FA analysis

@ref

43224

Fatty acid	Percentage
C17:0 anteiso	23.9
C16:0 iso	12.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sediment
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43224	sediment sample	Lonar soda lake, Buldhana, Maharashtra, India	India	IND	Asia	19	76 19/76
67771	From Lonar soda lake in India		India	IND	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464267v1 assembly for Nesterenkonia cremea CGMCC 1.15388	contig	GCA_014642675	1882340.4	2995528767	1882340	64.23

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43224	Nesterenkonia sp. 10CT partial 16S rRNA gene, strain 10CT	LT601575	1441		1882340

GC content

@ref	GC-content (mol%)	Method
43224	68.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1464267v1 assembly for Nesterenkonia cremea CGMCC 1.15388
BV-BRC: 1882340.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.63	no
125439	gram_stain	BacteriaNetⓘ	negative	50.62	no
125439	spore_formation	BacteriaNetⓘ	no	98.02	no
125439	motility	BacteriaNetⓘ	yes	56.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nesterenkonia cremea strain CGMCC 1.15388
PATRIC: 1882340.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.68	yes
125438	anaerobic	anaerobicⓘ	no	98.64	yes
125438	spore-forming	spore-formingⓘ	no	72.64	yes
125438	aerobic	aerobicⓘ	yes	85.20	no
125438	thermophilic	thermophileⓘ	no	92.50	yes
125438	flagellated	motile2+ⓘ	no	91.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nesterenkonia cremea sp. nov., a bacterium isolated from a soda lake.	Sultanpuram VR, Mothe T, Chintalapati S, Chintalapati VR	Int J Syst Evol Microbiol	10.1099/ijsem.0.001876	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43224	Vishnuvardhan Reddy Sultanpuram, Thirumala Mothe, Sasikala Chintalapati and Venkata Ramana Chintalapati: Nesterenkonia cremea sp. nov., a bacterium isolated from a soda lake. IJSEM 67: 1861 - 1866 2017 ( DOI 10.1099/ijsem.0.001876 , PubMed 28665262 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nesterenkonia cremea (LMG 29100, KCTC 39636, CGMCC 1.15388)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014642675

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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