Kibdelosporangium rhizovicinum K12-0791 | Type strain | DSM 103985, TBRC 6788, NBRC 112390

Strain identifier

BacDive ID: 140584

Type strain:

Species: Kibdelosporangium rhizovicinum

Strain Designation: K12-0791

Culture col. no.: DSM 103985, TBRC 6788, NBRC 112390

Strain history: <- A. Matsumoto, Kitasato Univ., Kitasato Institute for Life Sciences, Tokyo, Japan; K12-0791 <- K. Tanaka, Kitasato Univ., Kitasato Institute for Life Sciences, Tokyo, Japan; K12-0791

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Kibdelosporangium rhizovicinum K12-0791 is an aerobe, spore-forming, gram-positive bacterium that builds a substrate mycelium and was isolated from rhizosphere soil of pteridophytic plant.

gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Pseudonocardiales
	Family	Pseudonocardiaceae
	Genus	Kibdelosporangium
	Species	Kibdelosporangium rhizovicinum
	Full Scientific Name (PNU)	Kibdelosporangium rhizovicinum Mingma et al. 2017

Information on morphological and physiological propertiesMorphology

[Ref.: #43258]	Gram stain	positive
[Ref.: #43258]	Motility	no

[Ref.: #43258]	Multicellular complex forming ability	yes
[Ref.: #43258]	Multicellular complex name	substrate mycelium
[Ref.: #43258]	Multicellular complex color	pale yellow to yellow

[Ref.: #43258]	Multicellular complex forming ability	yes
[Ref.: #43258]	Multicellular complex name	aerial mycelium
[Ref.: #43258]	Multicellular complex color	white

Multimedia content

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Caption:

Medium 553 28°C

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License/Copyright:

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

[Ref.: #43258]	Pigment production	no
[Ref.: #43258]	Pigment name	Soluble pigments
[Ref.: #43258]	Pigment production	no
[Ref.: #43258]	Pigment name	Melanin

Information on culture and growth conditionsCulture and growth conditions

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Culture medium

ISP2

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Culture medium growth

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Culture medium

ISP3

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Culture medium growth

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Culture medium

ISP4

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Culture medium growth

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Culture medium

potato dextrose agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Czapek's agar

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Culture medium growth

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

medium recipe provided by DSMZ

		Temperature
[Ref.: #43258]	optimum	22-34 ̊C
[Ref.: #43258]	growth	14-36 ̊C
[Ref.: #64853]	growth	28 ̊C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43258]			growth	5.0-8.0

Information on physiology and metabolismPhysiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #43258]	Spore description	rod-shaped spores with smooth surfaces
[Ref.: #43258]	Type of spore	spore
[Ref.: #43258]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43258]		NaCl		growth	0-2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43258]	(-)-D-fructose ChEBI	+	carbon source
[Ref.: #43258]	(-)-D-fructose ChEBI	+	builds acid from
[Ref.: #43258]	(-)-D-rhamnose	+	carbon source
[Ref.: #43258]	(-)-D-rhamnose	+	builds acid from
[Ref.: #43258]	beta-lactose ChEBI	+	carbon source
[Ref.: #43258]	beta-lactose ChEBI	+	builds acid from
[Ref.: #43258]	cellobiose ChEBI	+	carbon source
[Ref.: #43258]	cellobiose ChEBI	+	builds acid from
[Ref.: #43258]	D-galactose ChEBI	+	carbon source
[Ref.: #43258]	D-galactose ChEBI	+	builds acid from
[Ref.: #43258]	D-mannitol ChEBI	+/-	carbon source
[Ref.: #43258]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43258]	glucose ChEBI	+	carbon source
[Ref.: #43258]	glucose ChEBI	+	builds acid from
[Ref.: #43258]	L-arabinose ChEBI	-	carbon source
[Ref.: #43258]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43258]	maltose ChEBI	+	carbon source
[Ref.: #43258]	maltose ChEBI	+	builds acid from
[Ref.: #43258]	mannose ChEBI	+	carbon source
[Ref.: #43258]	mannose ChEBI	+	builds acid from
[Ref.: #43258]	melibiose ChEBI	+	carbon source
[Ref.: #43258]	melibiose ChEBI	+	builds acid from
[Ref.: #43258]	myo-inositol ChEBI	+	carbon source
[Ref.: #43258]	myo-inositol ChEBI	+	builds acid from
[Ref.: #43258]	nitrate ChEBI	-	reduction
[Ref.: #43258]	raffinose ChEBI	+	carbon source
[Ref.: #43258]	raffinose ChEBI	+	builds acid from
[Ref.: #43258]	ribose ChEBI	+	carbon source
[Ref.: #43258]	ribose ChEBI	+	builds acid from
[Ref.: #43258]	sorbose ChEBI	-	carbon source
[Ref.: #43258]	sucrose ChEBI	+	carbon source
[Ref.: #43258]	sucrose ChEBI	+	builds acid from
[Ref.: #43258]	xylitol ChEBI	-	carbon source
[Ref.: #43258]	xylitol ChEBI	+	builds acid from
[Ref.: #43258]	xylose ChEBI	+	carbon source
[Ref.: #43258]	xylose ChEBI	+	builds acid from
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	Enzyme	Enzyme activity	EC number
[Ref.: #43258]	acid phosphatase	+	3.1.3.2
[Ref.: #43258]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43258]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43258]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43258]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43258]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43258]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43258]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #43258]	beta-glucosidase	+	3.2.1.21
[Ref.: #43258]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43258]	cystine arylamidase	+	3.4.11.3
[Ref.: #43258]	esterase (C 4)	+
[Ref.: #43258]	esterase Lipase (C 8)	+
[Ref.: #43258]	glucosaminidase	-
[Ref.: #43258]	leucine aminopeptidase	+	3.4.1.1
[Ref.: #43258]	lipase (C 14)	-
[Ref.: #43258]	phosphoamidase	+	3.9.1.1
[Ref.: #43258]	trypsin	+	3.4.21.4
[Ref.: #43258]	urease	+	3.5.1.5
[Ref.: #43258]	valine arylamidase	+
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Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #43258]	Sample type/isolated from	rhizosphere soil of pteridophytic plant
[Ref.: #43258]	Geographic location (country and/or sea, region)	Tokyo, Japan
[Ref.: #43258]	Country	Japan
[Ref.: #43258]	Country ISO 3 Code	JPN
[Ref.: #43258]	Continent	Asia

[Ref.: #64853]	Sample type/isolated from	rhizosphere soil of pteridophytic plant
[Ref.: #64853]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #64853]	Country	Japan
[Ref.: #64853]	Country ISO 3 Code	JPN
[Ref.: #64853]	Continent	Asia

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

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Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64853]	Kibdelosporangium rhizovicinum gene for 16S ribosomal RNA, partial sequence	LC169782	1424	ENA	1882233 tax ID

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GC-content

66.3 mol%

high performance liquid chromatography (HPLC)

Availability in culture collectionsExternal links

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Culture collection no.

DSM 103985, TBRC 6788, NBRC 112390

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#43258

Ratchanee Mingma, Kannika Duangmal, Satoshi Omura, Yoko Takahashi and Atsuko Matsumoto: Three novel species of the genus Kibdelosporangium; Kibdelosporangium kanagawaense sp. nov., Kibdelosporangium rhizosphaerae sp. nov. and Kibdelosporangium rhizovicinum sp. nov.. IJSEM 67: 1758 - 1765 2017 ( DOI 10.1099/ijsem.0.001861 )

#64853

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103985

* These References are textmined

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