Name: Micromonospora fulva UDF-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140581

Type strain:

Species: Micromonospora fulva

Strain Designation: UDF-1

Culture col. no.: KACC 18696, NBRC 111826, DSM 108275

Strain history: <- Y. Muramatsu, NBRC; NBRC 111826 <- K.-S. Whang, Mokwon Univ., College of Science & Technol., Daejeon, Korea; UDF-1

NCBI tax ID(s): 624383 (species)

SI-ID 403309

DSM 108664, DSM 108275

Section

Micromonospora fulva UDF-1 is an aerobe, spore-forming, mesophilic bacterium that was isolated from forest soil.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora fulva**
	Full Scientific Name (LPSN)	Micromonospora fulva Lee and Whang 2017

Information on morphological and physiological properties Morphology

[Ref.: #43237]	Gram stain	positive

[Ref.: #43237]	Colony color	brownish-orange
[Ref.: #43237]	Cultivation medium used	ISP2

[Ref.: #43237]	Colony color	brownish-orange
[Ref.: #43237]	Cultivation medium used	ISP3

[Ref.: #43237]	Colony color	brownish-orange
[Ref.: #43237]	Cultivation medium used	ISP4

[Ref.: #43237]	Colony color	light orange
[Ref.: #43237]	Cultivation medium used	ISP5

[Ref.: #43237]	Colony color	light orange
[Ref.: #43237]	Cultivation medium used	ISP7

[Ref.: #43237]	Colony color	orange
[Ref.: #43237]	Cultivation medium used	ISP6

[Ref.: #43237]	Pigment production	no
[Ref.: #43237]	Pigment name	Melanin
[Ref.: #43237]	Pigment production	no
[Ref.: #43237]	Pigment name	Diffusible pigments

[Ref.: #43237]	Multicellular complex forming ability	yes
[Ref.: #43237]	Multicellular complex further description	Well-developed and branched substrate mycelium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43237]

Culture medium

ISP2

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Culture medium growth

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Culture medium

ISP3

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Culture medium growth

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Culture medium

ISP4

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Culture medium growth

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Culture medium

ISP5

[Ref.: #43237]

Culture medium growth

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Culture medium

ISP7

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Culture medium growth

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Culture medium

ISP6

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Culture medium growth

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #43237]	optimum	28 °C
[Ref.: #43237]	growth	20-37 °C
[Ref.: #64850]	growth	28 °C

[Ref.: #43237]	Temperature range	mesophilic
[Ref.: #64850]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43237]			optimum	7.0-8.0
[Ref.: #43237]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43237]

Oxygen tolerance

aerobe

[Ref.: #43237]	Spore description	single spores with rough surfaces
[Ref.: #43237]	Type of spore	spore
[Ref.: #43237]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43237]		NaCl		growth	0-1	%(w/v)
[Ref.: #43237]		NaCl		maximum	2	%

[Ref.: #43237]

Observation

forms aerial mycelium

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43237]	casein	+	hydrolysis
[Ref.: #43237]	cellulose ChEBI	+	hydrolysis
[Ref.: #43237]	D-fructose ChEBI	-	assimilation
[Ref.: #43237]	D-glucose ChEBI	+	assimilation
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #43237]	D-mannitol ChEBI	+	assimilation
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #43237]	D-mannose ChEBI	+	assimilation
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #43237]	D-xylose ChEBI	+	assimilation
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #43237]	gelatin ChEBI	-	hydrolysis
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #43237]	L-arabinose ChEBI	+	assimilation
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #43237]	L-rhamnose ChEBI	+	assimilation
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #43237]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #43237]	raffinose ChEBI	+	assimilation
[Ref.: #43237]	starch ChEBI	+	hydrolysis
[Ref.: #43237]	sucrose ChEBI	+	assimilation
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #43237]	urea ChEBI	-	hydrolysis
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #43237]	acid phosphatase	-	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #43237]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #43237]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #43237]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #43237]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #43237]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #43237]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #43237]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #43237]	beta-glucosidase	+	3.2.1.21
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #43237]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #43237]	cystine arylamidase	-	3.4.11.3
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #43237]	esterase (C 4)	+/-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #43237]	esterase Lipase (C 8)	+/-
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #43237]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #43237]	lipase (C 14)	+/-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #43237]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43237]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #43237]	trypsin	+	3.4.21.4
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #43237]	valine arylamidase	-
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43237]

Fatty acid	Percentage
C16:0 iso	25.7
C15:0 anteiso	14.2
C15:0 iso	12.9

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #64850]	24786	-	-	-	-	-	+	+	+	+	+	+	-	+/-	+/-	+/-	-	+/-	+	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #64850]	14123	-	+	-	+/-	-	+	-	+/-	+/-	-	+	+	-	+	-	+	-	+/-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43237]	Sample type/isolated from	forest soil
[Ref.: #43237]	Geographic location (country and/or sea, region)	Chungnam, South Korea
[Ref.: #43237]	Country	Republic of Korea
[Ref.: #43237]	Country ISO 3 Code	KOR
[Ref.: #43237]	Continent	Asia
[Ref.: #43237]	Geographic location	36.0000°/127.0000°

[Ref.: #64850]	Sample type/isolated from	Forest soil
[Ref.: #64850]	Geographic location (country and/or sea, region)	Gyeryong mountain, Chungnam (36° 20' 40.7'' N, 127° 12' 22.2'' E)
[Ref.: #64850]	Country	Republic of Korea
[Ref.: #64850]	Country ISO 3 Code	KOR
[Ref.: #64850]	Continent	Asia
[Ref.: #64850]	Geographic location	36.3446°/127.2060°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64850]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43237]	16S rRNA gene sequences	FJ772077	1451	ENA	624383 tax ID

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GC-content

73.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #64850]

Culture collection no.

KACC 18696, NBRC 111826, DSM 108275

[Ref.: #96746]

SI-ID 403309

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora fulva sp. nov., isolated from forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001858	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43237

Hyo-Jin Lee and Kyung-Sook Whang: Micromonospora fulva sp. nov., isolated from forest soil. IJSEM 67: 1746 - 1751 2017 ( DOI 10.1099/ijsem.0.001858 , PubMed 28629505 )

#64850

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108275

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#96746

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403309.1 )

* These data were automatically processed and therefore are not curated

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