Name: Pseudonocardia profundimaris GY0556
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140580

Type strain:

Species: Pseudonocardia profundimaris

Strain Designation: GY0556

Culture col. no.: MCCC 1A10574, KCTC 39641

NCBI tax ID(s): 1804989 (species)

Section

Pseudonocardia profundimaris GY0556 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from marine sediment.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Pseudonocardia*
	Species	**Pseudonocardia profundimaris**
	Full Scientific Name (LPSN)	Pseudonocardia profundimaris Zhang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43268]	Gram stain	positive

[Ref.: #43268]	Motility	no

[Ref.: #43268]	Pigment production	no
[Ref.: #43268]	Pigment name	diffusible pigment

[Ref.: #43268]	Multicellular complex forming ability	yes
[Ref.: #43268]	Multicellular complex further description	white aerial mycelium and orange-yellow branched substrate mycelium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43268]

Culture medium

MZ2216E (modified ZoBell 2216E agar)

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Culture medium growth

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #43268]			optimum	30-35 °C
[Ref.: #43268]			growth	4-40 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43268]			optimum	8.0-9.0
[Ref.: #43268]			growth	5.0-12.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43268]		NaCl		growth	0-8	%(w/v)
[Ref.: #43268]		NaCl		optimum	0-3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43268]	4-nitrophenyl beta-D-galactopyranoside ChEBI	+	hydrolysis
[Ref.: #43268]	adipate ChEBI	+/-	assimilation
[Ref.: #43268]	casein	-	hydrolysis
[Ref.: #43268]	cellulose ChEBI	+	hydrolysis
[Ref.: #43268]	D-glucose ChEBI	+	assimilation
[Ref.: #43268]	D-glucose ChEBI	-	fermentation
[Ref.: #43268]	D-mannitol ChEBI	-	assimilation
[Ref.: #43268]	D-mannose ChEBI	+	assimilation
[Ref.: #43268]	decanoate ChEBI	-	assimilation
[Ref.: #43268]	esculin ChEBI	+	hydrolysis
[Ref.: #43268]	gelatin ChEBI	+	hydrolysis
[Ref.: #43268]	glucose ChEBI	-	fermentation
[Ref.: #43268]	L-arabinose ChEBI	-	assimilation
[Ref.: #43268]	malate ChEBI	+	assimilation
[Ref.: #43268]	maltose ChEBI	+	assimilation
[Ref.: #43268]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43268]	nitrate ChEBI	+	reduction
[Ref.: #43268]	phenylacetate ChEBI	-	assimilation
[Ref.: #43268]	potassium gluconate ChEBI	+/-	assimilation
[Ref.: #43268]	sodium citrate ChEBI	-	assimilation
[Ref.: #43268]	starch ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43268]	acetoin ChEBI	yes
[Ref.: #43268]	hydrogen sulfide ChEBI	no
[Ref.: #43268]	indole ChEBI	no
[Ref.: #43268]	melanin ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43268]		acetoin ChEBI	+
[Ref.: #43268]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43268]	acid phosphatase	+	3.1.3.2
[Ref.: #43268]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43268]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43268]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43268]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43268]	alpha-mannosidase	+/-	3.2.1.24
[Ref.: #43268]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43268]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #43268]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #43268]	beta-glucosidase	+	3.2.1.21
[Ref.: #43268]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43268]	catalase	+	1.11.1.6
[Ref.: #43268]	cystine arylamidase	+	3.4.11.3
[Ref.: #43268]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43268]	esterase (C 4)	+
[Ref.: #43268]	esterase Lipase (C 8)	+
[Ref.: #43268]	leucine arylamidase	+	3.4.11.1
[Ref.: #43268]	lipase (C 14)	-
[Ref.: #43268]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43268]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43268]	trypsin	-	3.4.21.4
[Ref.: #43268]	urease	-	3.5.1.5
[Ref.: #43268]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C16:0 iso	39.6
C16:1 iso H	18.6
C17:1 iso ω9c / C16:0 10-methyl	6
C16:1ω7c / C16:1ω6c	3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43268]	Sample type/isolated from	marine sediment
[Ref.: #43268]	Geographic location (country and/or sea, region)	western Pacific Ocean
[Ref.: #43268]	Geographic location	11.0000°/141.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43268]	16S rRNA gene sequences	KT751083	1484	ENA	1804989 tax ID

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GC-content

76.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

MCCC 1A10574, KCTC 39641

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia profundimaris sp. nov., isolated from marine sediment.	Zhang G, Wang L, Li J, Zhou Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001849	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43268

Gaiyun Zhang, Lina Wang, Jinglong Li and Yuan Zhou: Pseudonocardia profundimaris sp. nov., isolated from marine sediment. IJSEM 67: 1693 - 1697 2017 ( DOI 10.1099/ijsem.0.001849 , PubMed 28151383 )

* These data were automatically processed and therefore are not curated

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