Dyella lipolytica (NBRC 111473, KCTC 52132, DHOB07)

Name: Dyella lipolytica (NBRC 111473, KCTC 52132, DHOB07)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140577

Type strain

Strain Designation DHOB07

Culture col. no. NBRC 111473 KCTC 52132 DHOB07

NCBI tax ID(s) 1867835

Special Collections KCTC Literature strains

History <- Lihong QIU, Sun Yat-Sen Univ., China

Links

Dyella lipolytica DHOB07 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from forest soil of Dinghushan Biosphere Reserve.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27582

KCTC 52132,NBRC 111473

@ref 20215

Last LPSN update 2026-02-09 11:33:39

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Rhodanobacteraceae

Genus Dyella

Species Dyella lipolytica

Full scientific name Dyella lipolytica Tang et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43180	negative	1.0-2.5 µm	0.3-0.6 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43180	1.2-1.7 mm	yellow	circular	2 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43180	Reasoner's 2A agar (R2A)
43180	Nutrient agar (NA)
43180	Trypticase Soy Agar (TSA)
43180	LB (Luria-Bertani) MEDIUM
43180	MacConkey agar

Culture temp

@ref	Growth	Type	Temperature (°C)
43180	positive	optimum	28
43180	positive	growth	10-37
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
43180	positive	optimum	5-5.5
43180	positive	growth	4-7	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43180	aerobe
67771	aerobe

Spore formation

@ref	Type of spore	Spore formation
43180	spore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43180	NaCl	positive	growth	0-0.5 %(w/v)
43180	NaCl	positive	optimum	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43180	17128 ChEBI	adipate	+	carbon source
43180	27613 ChEBI	amygdalin	-	carbon source
43180	18305 ChEBI	arbutin	+	carbon source
43180		casein	-	hydrolysis
43180	17057 ChEBI	cellobiose	-	carbon source
43180	17108 ChEBI	D-arabinose	+	carbon source
43180	12936 ChEBI	D-galactose	+	carbon source
43180	17634 ChEBI	D-glucose	+	carbon source
43180	62318 ChEBI	D-lyxose	-	carbon source
43180	17924 ChEBI	D-sorbitol	+	carbon source
43180	16443 ChEBI	D-tagatose	+	carbon source
43180	65327 ChEBI	D-xylose	-	carbon source
43180	27689 ChEBI	decanoate	-	carbon source
43180	17113 ChEBI	erythritol	+	carbon source
43180	4853 ChEBI	esculin	-	hydrolysis
43180		esculin ferric citrate	+	carbon source
43180	5291 ChEBI	gelatin	-	hydrolysis
43180	28066 ChEBI	gentiobiose	-	carbon source
43180	17234 ChEBI	glucose	-	fermentation
43180	28087 ChEBI	glycogen	+	carbon source
43180	15443 ChEBI	inulin	+	carbon source
43180	30849 ChEBI	L-arabinose	-	carbon source
43180	18287 ChEBI	L-fucose	+	carbon source
43180	17716 ChEBI	lactose	-	carbon source
43180	25115 ChEBI	malate	+	carbon source
43180	6731 ChEBI	melezitose	+	carbon source
43180	28053 ChEBI	melibiose	-	carbon source
43180	320061 ChEBI	methyl alpha-D-glucopyranoside	-	carbon source
43180	17268 ChEBI	myo-inositol	+	carbon source
43180	506227 ChEBI	N-acetylglucosamine	+	carbon source
43180	17632 ChEBI	nitrate	-	reduction
43180		potassium 2-dehydro-D-gluconate	-	carbon source
43180	16634 ChEBI	raffinose	+	carbon source
43180	17814 ChEBI	salicin	-	carbon source
43180	28017 ChEBI	starch	-	hydrolysis
43180	28017 ChEBI	starch	-	carbon source
43180	17992 ChEBI	sucrose	-	carbon source
43180	27082 ChEBI	trehalose	+	carbon source
43180	32528 ChEBI	turanose	-	carbon source
43180	53426 ChEBI	tween 80	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43180	2637	amikacin	30 µg
43180	17698	chloramphenicol		30 µg
43180	100241	ciprofloxacin	5 µg
43180	48923	erythromycin	15 µg
43180	17833	gentamicin	10 µg
43180	6104	kanamycin	30 µg
43180	7528	netilmycin	30 µg
43180	28368	novobiocin	5 µg
43180	17334	penicillin		10 Unit
43180	59062	polymyxin	30 Unit
43180	17076	streptomycin	10 µg
43180	27902	tetracycline	30 µg
43180	28864	tobramycin	10 µg
43180	28001	vancomycin	30 µg

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43180	16136 ChEBI	hydrogen sulfide
43180	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43180	acid phosphatase	+	3.1.3.2
43180	alkaline phosphatase	-	3.1.3.1
43180	alpha-chymotrypsin	-	3.4.21.1
43180	alpha-fucosidase	+	3.2.1.51
43180	alpha-galactosidase	-	3.2.1.22
43180	alpha-glucosidase	+	3.2.1.20
43180	alpha-mannosidase	+	3.2.1.24
43180	arginine dihydrolase	-	3.5.3.6
43180	beta-galactosidase	+	3.2.1.23
43180	beta-glucosidase	-	3.2.1.21
43180	beta-glucuronidase	-	3.2.1.31
43180	catalase	+	1.11.1.6
43180	cystine arylamidase	+	3.4.11.3
43180	cytochrome oxidase	-	1.9.3.1
43180	esterase (C 4)	+
43180	esterase Lipase (C 8)	+
43180	leucine arylamidase	+	3.4.11.1
43180	lipase (C 14)	-
43180	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43180	naphthol-AS-BI-phosphohydrolase	-
43180	trypsin	-	3.4.21.4
43180	urease	-	3.5.1.5
43180	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43180

Fatty acid	Percentage
C17:1 iso ω9c	20.4
C16:0 iso	19.2
C15:0 iso	14.3
C15:0 iso 2OH / C16:1ω7c	7.6
C17:0 iso	6.2
C16:0	6.1
C15:0 anteiso	5.1
C11:0 iso 3OH	4
C11:0 iso	3.7
C13:0 iso 3OH	2.3
C14:0 iso	1.4
C17:0 anteiso	1.2
cyclo-C17:0	1.1
C18:0 iso	0.9
C15:1ω6c	0.8
C17:0 iso 3OH	0.5
C15:1ω5c	0.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43180	forest soil of Dinghushan Biosphere Reserve	Guangdong Province, PR China	China	CHN	Asia	23	112 23/112
67771	From forest soil	Dinghushan Biosphere Reserve, Guangdong Province	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3016007v1 assembly for Dyella lipolytica NBRC 111473	scaffold	GCA_030160075	1867835.4	8108179566	1867835	76.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43180	Dyella nitratireducens strain DHOB07 16S ribosomal RNA gene, partial sequence	KX430827	1468		1849580

GC content

@ref	GC-content (mol%)	Method
43180	59.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dyella tabacisoli sp. nov., a bacterium isolated from an arable soil sample of Nicotiana tabacum L.	Li QQ, Chen X, Zhou XK, Dong LM, Xiao M, Fang BZ, Li WJ, Duan YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003138	2019
Phylogeny	Dyella halodurans sp. nov., isolated from lower subtropical forest soil.	Cai YM, Gao ZH, Chen MH, Huang YX, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002969	2018
Phylogeny	Dyella lipolytica sp. nov., a lipolytic bacterium isolated from lower subtropical forest soil.	Tang L, Chen MH, Nie XC, Ma MR, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002020	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43180	Liang Tang, Mei-hong Chen, Xi-chen Nie, Meng-ran Ma and Li-hong Qiu: Dyella lipolytica sp. nov., a lipolytic bacterium isolated from lower subtropical forest soil. IJSEM 67: 1235 - 1240 2017 ( DOI 10.1099/ijsem.0.002020 , PubMed 28581924 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dyella lipolytica (NBRC 111473, KCTC 52132, DHOB07)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_030160075

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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