Anaeromicrobium sediminis DY2726D | Type strain | JCM 30224, MCCC 1A00776

Strain identifier

BacDive ID: 140570

Type strain:

Species: Anaeromicrobium sediminis

Strain Designation: DY2726D

Culture col. no.: JCM 30224, MCCC 1A00776

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Sequence information

External links

Anaeromicrobium sediminis DY2726D is an anaerobe, heterotroph, mesophilic bacterium that was isolated from deep-sea sediment sample of the West Pacific Ocean at a depth of 5445 m.

gram-variable
motile
rod-shaped
anaerobe
heterotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Clostridia
	Order	Eubacteriales
	Family	Clostridiaceae
	Genus	Anaeromicrobium
	Species	Anaeromicrobium sediminis
	Full Scientific Name (PNU)	Anaeromicrobium sediminis Zhang et al. 2017

Information on morphological and physiological propertiesMorphology

[Ref.: #43340]	Gram stain	variable
[Ref.: #43340]	Cell length	4-15 µm
[Ref.: #43340]	Cell width	0.5-0.8 µm
[Ref.: #43340]	Cell shape	rod-shaped
[Ref.: #43340]	Motility	yes

Information on culture and growth conditionsCulture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #43340]			optimum	37 ̊C
[Ref.: #43340]			growth	25-40 ̊C

[Ref.: #43340]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43340]			optimum	7.5
[Ref.: #43340]			growth	6.5-9.0

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #43340]

Oxygen tolerance

anaerobe

[Ref.: #43340]

Nutrition type

heterotroph

[Ref.: #43340]	Type of spore	endospore
[Ref.: #43340]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43340]		Marine salts		growth	10-30	g/L
[Ref.: #43340]		Marine salts		optimum	20	g/L

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43340]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #43340]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #43340]	3-O-methyl-D-glucose ChEBI	+	carbon source
[Ref.: #43340]	acetate ChEBI	-	carbon source
[Ref.: #43340]	amorphous fe(iii) oxyhydroxid	+	reduction
[Ref.: #43340]	amorphous iron (iii) oxide	+	reduction
[Ref.: #43340]	cellobiose ChEBI	+	carbon source
[Ref.: #43340]	D-fructose ChEBI	+	carbon source
[Ref.: #43340]	D-galactose ChEBI	+	carbon source
[Ref.: #43340]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #43340]	D-glucosaminic acid ChEBI	+	carbon source
[Ref.: #43340]	D-glucose ChEBI	+	carbon source
[Ref.: #43340]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #43340]	D-mannose ChEBI	+	carbon source
[Ref.: #43340]	dextrin ChEBI	+	carbon source
[Ref.: #43340]	elemental sulfur ChEBI	-	reduction
[Ref.: #43340]	formate ChEBI	-	carbon source
[Ref.: #43340]	fumarate ChEBI	-	carbon source
[Ref.: #43340]	gentiobiose ChEBI	+	carbon source
[Ref.: #43340]	glyoxylate ChEBI	-	carbon source
[Ref.: #43340]	goethite	+	reduction
[Ref.: #43340]	L-alaninamide ChEBI	-	carbon source
[Ref.: #43340]	L-fucose ChEBI	+	carbon source
[Ref.: #43340]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43340]	lactate ChEBI	-	carbon source
[Ref.: #43340]	malate ChEBI	-	carbon source
[Ref.: #43340]	maltose ChEBI	-	carbon source
[Ref.: #43340]	melibiose ChEBI	+	carbon source
[Ref.: #43340]	nitrate ChEBI	-	reduction
[Ref.: #43340]	palatinose ChEBI	+	carbon source
[Ref.: #43340]	peptone	+	assimilation
[Ref.: #43340]	succinate ChEBI	-	carbon source
[Ref.: #43340]	sucrose ChEBI	-	carbon source
[Ref.: #43340]	sulfate ChEBI	-	reduction
[Ref.: #43340]	sulfite ChEBI	-	reduction
[Ref.: #43340]	tartrate ChEBI	-	carbon source
[Ref.: #43340]	thiosulfate ChEBI	-	reduction
[Ref.: #43340]	trehalose ChEBI	-	carbon source
[Ref.: #43340]	tryptone	+	assimilation
[Ref.: #43340]	yeast extract	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43340]

Fatty acid	Percentage
C16:1	42
C14:0	31.9
C16:0	12.8

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #43340]	Sample type/isolated from	deep-sea sediment sample of the West Pacific Ocean at a depth of 5445 m
[Ref.: #43340]	Sampling date	2012-07
[Ref.: #43340]	Geographic location (country and/or sea, region)	Pacific Ocean
[Ref.: #43340]	Geographic location	16.0000°/154.0000°

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43340]	16S rRNA gene sequences	KJ137882	1414	ENA	1478221 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaeromicrobium sediminis DY2726D	GCA_002270055	scaffold	GenBank	1478221 tax ID
[Ref.: #66792]	Anaeromicrobium sediminis strain DY2726D	1478221.3	wgs	PATRIC	1478221 tax ID

[Ref.: #43340]

GC-content

33.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collectionsExternal links

[Ref.: #43340]

Culture collection no.

JCM 30224, MCCC 1A00776

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#43340

Xiaobo Zhang, Xiang Zeng, Xi Li, Karine Alain, Mohamed Jebbar, Zongze Shao: Anaeromicrobium sediminis gen. nov., sp. nov., a fermentative bacterium isolated from deep-sea sediment. IJSEM 67: 1462 - 1467 2017 ( DOI 10.1099/ijsem.0.001739 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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