Name: Mucilaginibacter galii PP-F2F-G47
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140568

Type strain:

Species: Mucilaginibacter galii

Strain Designation: PP-F2F-G47

Culture col. no.: CCM 8711, CIP 111182, LMG 29767, DSM 103633

Strain history: CIP <- 2016, S. Glaeser, Giessen Univ., Giessen, Germany: strain PP-F2F-G47

NCBI tax ID(s): 2005073 (species)

SI-ID 400512

DSM 103633, CIP 111182

Section

Mucilaginibacter galii PP-F2F-G47 is a Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from leaf samples of Galium album.

colony-forming
Gram-negative
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter galii**
	Full Scientific Name (LPSN)	Mucilaginibacter galii Aydogan et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43201]	Gram stain	negative
[Ref.: #119507]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.957

[Ref.: #43201]	Cell length	1.9-2.9 µm

[Ref.: #43201]	Cell width	0.82-0.84 µm

[Ref.: #43201]	Cell shape	rod-shaped
[Ref.: #119507]	Cell shape	rod-shaped

[Ref.: #43201]	Motility	no
[Ref.: #119507]	Motility	no

[Ref.: #43201]	Colony color	pale pink
[Ref.: #43201]	Colony shape	circular
[Ref.: #43201]	Incubation period	3 days
[Ref.: #43201]	Cultivation medium used	R2A

[Ref.: #43201]	Pigment production	no
[Ref.: #43201]	Pigment name	flexirubin

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Medium 65

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Culture medium growth

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Culture medium

PYE

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

CASO

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Culture medium growth

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Culture medium

malt agar

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Culture medium growth

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Culture medium

Columbia agar with sheep blood

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Culture medium growth

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

CIP Medium 566

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

DEV

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Culture medium growth

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Culture medium

MacConkey

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #43201]		growth	4-37 °C
[Ref.: #43201]	no	growth	45 °C
[Ref.: #43201]		optimum	15-28 °C
[Ref.: #43201]		growth	25 °C
[Ref.: #64847]		growth	25 °C

[Ref.: #43201]	Temperature range	thermophilic
[Ref.: #43201]	Temperature range	mesophilic
[Ref.: #64847]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #43201]		minimum	5
[Ref.: #43201]		growth	5.0-9.0
[Ref.: #43201]	inconsistent	growth	9
[Ref.: #43201]	no	growth	10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43201]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.936

	Salt	Tested relation		Salt conc.
[Ref.: #43201]	NaCl		growth	0-3	%(w/v)
[Ref.: #43201]	NaCl	inconsistent	growth	3	%
[Ref.: #43201]	NaCl		maximum	3	%

[Ref.: #43201]

Observation

produce large amounts of extracellular polymeric substances (EPS)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43201]	2-aminobutyrate ChEBI	-	carbon source
[Ref.: #43201]	2-oxogluconate	-	carbon source
[Ref.: #43201]	3-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43201]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #43201]	4-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43201]	adenine ChEBI	-	hydrolysis
[Ref.: #43201]	adipate ChEBI	-	assimilation
[Ref.: #43201]	adipate ChEBI	-	carbon source
[Ref.: #43201]	amygdalin ChEBI	+/-	builds acid from
[Ref.: #43201]	arbutin ChEBI	-	builds acid from
[Ref.: #43201]	arbutin ChEBI	-	carbon source
[Ref.: #43201]	azelaate ChEBI	-	carbon source
[Ref.: #43201]	beta-alanine ChEBI	-	carbon source
[Ref.: #43201]	casein	-	hydrolysis
[Ref.: #43201]	cellobiose ChEBI	+/-	builds acid from
[Ref.: #43201]	cellobiose ChEBI	-	carbon source
[Ref.: #43201]	cis-aconitate ChEBI	-	carbon source
[Ref.: #43201]	citrate ChEBI	-	carbon source
[Ref.: #43201]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43201]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43201]	D-fructose ChEBI	+	builds acid from
[Ref.: #43201]	D-fructose ChEBI	-	carbon source
[Ref.: #43201]	D-galactose ChEBI	+/-	builds acid from
[Ref.: #43201]	D-galactose ChEBI	-	carbon source
[Ref.: #43201]	D-gluconate ChEBI	-	carbon source
[Ref.: #43201]	D-glucose ChEBI	+	builds acid from
[Ref.: #43201]	D-glucose ChEBI	-	carbon source
[Ref.: #43201]	D-mannitol ChEBI	-	hydrolysis
[Ref.: #43201]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43201]	D-mannitol ChEBI	-	carbon source
[Ref.: #43201]	D-mannose ChEBI	+	assimilation
[Ref.: #43201]	D-mannose ChEBI	+/-	builds acid from
[Ref.: #43201]	D-mannose ChEBI	-	carbon source
[Ref.: #43201]	D-ribose ChEBI	-	builds acid from
[Ref.: #43201]	D-ribose ChEBI	-	carbon source
[Ref.: #43201]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43201]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43201]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43201]	D-xylose ChEBI	+/-	builds acid from
[Ref.: #43201]	D-xylose ChEBI	-	carbon source
[Ref.: #43201]	decanoate ChEBI	-	assimilation
[Ref.: #43201]	erythritol ChEBI	-	builds acid from
[Ref.: #43201]	esculin ChEBI	+	hydrolysis
[Ref.: #43201]	esculin ferric citrate	+	builds acid from
[Ref.: #43201]	fumarate ChEBI	-	carbon source
[Ref.: #43201]	galactitol ChEBI	-	builds acid from
[Ref.: #43201]	gelatin ChEBI	-	hydrolysis
[Ref.: #43201]	gentiobiose ChEBI	+/-	builds acid from
[Ref.: #43201]	glucose ChEBI	-	hydrolysis
[Ref.: #43201]	glucose ChEBI	+	assimilation
[Ref.: #43201]	glucose ChEBI	-	fermentation
[Ref.: #43201]	glutarate ChEBI	-	carbon source
[Ref.: #43201]	glycerol ChEBI	-	builds acid from
[Ref.: #43201]	glycogen ChEBI	-	builds acid from
[Ref.: #43201]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43201]	inulin ChEBI	+	builds acid from
[Ref.: #43201]	itaconate ChEBI	-	carbon source
[Ref.: #43201]	L-alanine ChEBI	-	carbon source
[Ref.: #43201]	L-arabinose ChEBI	+	assimilation
[Ref.: #43201]	L-arabinose ChEBI	+/-	builds acid from
[Ref.: #43201]	L-arabinose ChEBI	-	carbon source
[Ref.: #43201]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43201]	L-aspartate ChEBI	-	carbon source
[Ref.: #43201]	L-fucose ChEBI	+/-	builds acid from
[Ref.: #43201]	L-histidine ChEBI	-	carbon source
[Ref.: #43201]	L-leucine ChEBI	-	carbon source
[Ref.: #43201]	L-malate ChEBI	-	carbon source
[Ref.: #43201]	L-ornithine ChEBI	-	carbon source
[Ref.: #43201]	L-phenylalanine ChEBI	-	carbon source
[Ref.: #43201]	L-proline ChEBI	-	carbon source
[Ref.: #43201]	L-rhamnose ChEBI	+/-	builds acid from
[Ref.: #43201]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43201]	L-serine ChEBI	-	carbon source
[Ref.: #43201]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43201]	L-tryptophan ChEBI	-	carbon source
[Ref.: #43201]	L-xylose ChEBI	-	builds acid from
[Ref.: #43201]	lactate ChEBI	-	carbon source
[Ref.: #43201]	lactose ChEBI	+	builds acid from
[Ref.: #43201]	malate ChEBI	-	assimilation
[Ref.: #43201]	maltitol ChEBI	-	carbon source
[Ref.: #43201]	maltose ChEBI	+	assimilation
[Ref.: #43201]	maltose ChEBI	+/-	builds acid from
[Ref.: #43201]	maltose ChEBI	-	carbon source
[Ref.: #43201]	melezitose ChEBI	-	builds acid from
[Ref.: #43201]	melibiose ChEBI	-	builds acid from
[Ref.: #43201]	melibiose ChEBI	-	carbon source
[Ref.: #43201]	mesaconate ChEBI	-	carbon source
[Ref.: #43201]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43201]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43201]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43201]	myo-inositol ChEBI	+/-	builds acid from
[Ref.: #43201]	myo-inositol ChEBI	-	carbon source
[Ref.: #43201]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #43201]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43201]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43201]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43201]	nitrate ChEBI	-	reduction
[Ref.: #43201]	phenylacetate ChEBI	-	assimilation
[Ref.: #43201]	phenylacetate ChEBI	-	carbon source
[Ref.: #43201]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #43201]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #43201]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43201]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43201]	propionate ChEBI	-	carbon source
[Ref.: #43201]	putrescine ChEBI	-	carbon source
[Ref.: #43201]	pyruvate ChEBI	-	carbon source
[Ref.: #43201]	raffinose ChEBI	+	builds acid from
[Ref.: #43201]	ribitol ChEBI	-	builds acid from
[Ref.: #43201]	ribitol ChEBI	-	carbon source
[Ref.: #43201]	salicin ChEBI	+/-	builds acid from
[Ref.: #43201]	salicin ChEBI	-	carbon source
[Ref.: #43201]	sodium acetate ChEBI	-	carbon source
[Ref.: #43201]	sodium citrate ChEBI	-	assimilation
[Ref.: #43201]	starch ChEBI	-	hydrolysis
[Ref.: #43201]	starch ChEBI	+/-	builds acid from
[Ref.: #43201]	suberic acid ChEBI	-	carbon source
[Ref.: #43201]	sucrose ChEBI	+/-	builds acid from
[Ref.: #43201]	sucrose ChEBI	-	carbon source
[Ref.: #43201]	trans-aconitate ChEBI	-	carbon source
[Ref.: #43201]	trehalose ChEBI	+/-	builds acid from
[Ref.: #43201]	trehalose ChEBI	-	carbon source
[Ref.: #43201]	turanose ChEBI	-	builds acid from
[Ref.: #43201]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43201]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43201]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43201]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43201]	tyrosine ChEBI	-	hydrolysis
[Ref.: #43201]	xanthine ChEBI	-	hydrolysis
[Ref.: #43201]	xylan ChEBI	-	hydrolysis
[Ref.: #43201]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43201]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43201]	acid phosphatase	+	3.1.3.2
[Ref.: #43201]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43201]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43201]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43201]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43201]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43201]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43201]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43201]	beta-galactosidase	+	3.2.1.23
[Ref.: #43201]	beta-glucosidase	+	3.2.1.21
[Ref.: #43201]	beta-glucuronidase	+	3.2.1.31
[Ref.: #43201]	catalase	+	1.11.1.6
[Ref.: #43201]	cystine arylamidase	+	3.4.11.3
[Ref.: #43201]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43201]	esterase (C 4)	+
[Ref.: #43201]	esterase Lipase (C 8)	+
[Ref.: #43201]	leucine arylamidase	+	3.4.11.1
[Ref.: #43201]	lipase (C 14)	-
[Ref.: #43201]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43201]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43201]	trypsin	-	3.4.21.4
[Ref.: #43201]	urease	-	3.5.1.5
[Ref.: #43201]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43201]

Fatty acid	Percentage
C16:1ω7c / C15:0 iso 2OH	65.8
C15:0 iso	34.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43201]	Sample type/isolated from	leaf samples of Galium album
[Ref.: #43201]	Geographic location (country and/or sea, region)	Giessen, Germany
[Ref.: #43201]	Country	Germany
[Ref.: #43201]	Country ISO 3 Code	DEU
[Ref.: #43201]	Continent	Europe
[Ref.: #43201]	Geographic location	50.0000°/8.0000°

[Ref.: #64847]	Sample type/isolated from	phyllosphere of Galium album/i>
[Ref.: #64847]	Geographic location (country and/or sea, region)	Hessen, Linden-Leihgestern near Giessen, Environmental Monitoring and Climate Impact Research Station Linden of the Justus-Liebig University Giessen (50° 32' N 8° 41.3'' E)
[Ref.: #64847]	Country	Germany
[Ref.: #64847]	Country ISO 3 Code	DEU
[Ref.: #64847]	Continent	Europe
[Ref.: #64847]	Geographic location	50.5333°/8.6883°

[Ref.: #119507]	Sample type/isolated from	Environment, Phyllosphere, Galium album
[Ref.: #119507]	Geographic location (country and/or sea, region)	Giessen, Hessen
[Ref.: #119507]	Country	Germany
[Ref.: #119507]	Country ISO 3 Code	DEU
[Ref.: #119507]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64847]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119507]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64847]	Mucilaginibacter galii strain PP-F2F-G47 16S ribosomal RNA gene, partial sequence	KX611229	1440	ENA	2005073 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mucilaginibacter galii CCM 8711	GCA_014635825	contig	GenBank	2005073 tax ID	*
[Ref.: #66792]	Mucilaginibacter galii strain CCM 8711	2005073.3	wgs	PATRIC	2005073 tax ID	*

[Ref.: #43201]

GC-content

42.4-46.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mucilaginibacter galii strain CCM 8711 PATRIC: 2005073.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mucilaginibacter galii strain CCM 8711 PATRIC: 2005073.3
[Ref.: #69480]	motile	no	88.167	no
[Ref.: #69480]	gram-positive	no	96.925	no
[Ref.: #69480]	anaerobic	no	99.057	no
[Ref.: #69480]	aerobic	yes	86.365	no
[Ref.: #69480]	halophile	no	95.06	no
[Ref.: #69480]	spore-forming	no	94.364	yes
[Ref.: #69480]	glucose-util	yes	87.418	no
[Ref.: #69480]	flagellated	no	97.691	yes
[Ref.: #69480]	thermophile	no	99.431	no
[Ref.: #69480]	glucose-ferment	no	90.873	yes

Availability in culture collections External links

[Ref.: #64847]

Culture collection no.

CCM 8711, CIP 111182, LMG 29767, DSM 103633

[Ref.: #96742]

SI-ID 400512

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Mucilaginibacter galii sp. nov. isolated from leaves of Galium album.	Aydogan EL, Busse HJ, Moser G, Muller C, Kampfer P, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijsem.0.001808	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43201

Ebru L. Aydogan, Hans-Jürgen Busse, Gerald Moser, Christoph Müller, Peter Kämpfer and Stefanie P. Glaeser: Proposal of Mucilaginibacter galii sp. nov. isolated from leaves of Galium album. IJSEM 67: 1318 - 1326 2017 ( DOI 10.1099/ijsem.0.001808 , PubMed 28109206 )

#64847

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103633

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96742

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400512.1 )

#119507 Collection of Institut Pasteur ; Curators of the CIP; CIP 111182
* These data were automatically processed and therefore are not curated

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Mucilaginibacter galii strain CCM 8711

Mucilaginibacter galii strain CCM 8711

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Change proposal