Name: Natrinema mahii H13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140566

Type strain:

Species: Natrinema mahii

Strain Designation: H13

Culture col. no.: BCRC 910151, NBRC 111885

NCBI tax ID(s): 1416969 (species)

Section

Natrinema mahii H13 is a halophilic, chemoorganotroph, thermophilic archaeon that forms circular colonies and was isolated from hypersaline soil samples from a saltern pond.

colony-forming
Gram-negative
rod-shaped
chemoorganotroph
halophilic
thermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Natrialbales*
	Family	*Natrialbaceae*
	Genus	*Natrinema*
	Species	**Natrinema mahii**
	Full Scientific Name (LPSN)	Natrinema mahii (Ding et al. 2017) de la Haba et al. 2022

Synonym

Haloterrigena mahii

Information on morphological and physiological properties Morphology

[Ref.: #43187]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.924

[Ref.: #43187]	Cell length	3-10 µm

[Ref.: #43187]	Cell shape	rod-shaped

[Ref.: #43187]	Motility	no

[Ref.: #43187]	Colony size	1-2 mm
[Ref.: #43187]	Colony color	deep red
[Ref.: #43187]	Colony shape	circular

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43187]

Culture medium

NHB medium

[Ref.: #43187]

Culture medium growth

[Ref.: #43187]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #43187]			growth	45-55 °C

[Ref.: #43187]

Temperature range

thermophilic

	pH	Kind of pH		pH
[Ref.: #43187]			growth	6.5-8.2

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43187]

Nutrition type

chemoorganotroph

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.961

[Ref.: #43187]

Halophily / tolerance level

halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43187]		NaCl		growth	2.0-5.1	M

[Ref.: #43187]

Observation

lyse in distilled water

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43187]	casamino acids	+	carbon source
[Ref.: #43187]	casamino acids	+	nitrogen source
[Ref.: #43187]	fructose ChEBI	+	builds acid from
[Ref.: #43187]	glycerol ChEBI	+	builds acid from
[Ref.: #43187]	lecithin ChEBI	+	hydrolysis
[Ref.: #43187]	nitrate ChEBI	+	reduction
[Ref.: #43187]	sorbitol ChEBI	+	builds acid from
[Ref.: #43187]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43187]	tween 80 ChEBI	+	hydrolysis

	Metabolite production	Metabolite	Production
[Ref.: #43187]		hydrogen sulfide ChEBI	yes
[Ref.: #43187]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43187]	amylase	-
[Ref.: #43187]	caseinase	-	3.4.21.50
[Ref.: #43187]	catalase	+	1.11.1.6
[Ref.: #43187]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43187]	gelatinase	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43187]	Sample type/isolated from	hypersaline soil samples from a saltern pond
[Ref.: #43187]	Geographic location (country and/or sea, region)	Chula Vista, San Diego, California, USA
[Ref.: #43187]	Country	USA
[Ref.: #43187]	Country ISO 3 Code	USA
[Ref.: #43187]	Continent	North America
* marker position based on {}

Isolation sources categories

#Condition	#Saline	-
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY349161 (>99% sequence identity) for Haloterrigena from Microbeatlas

Aquatic Samples	3
Soil Samples	2
Animal Samples
Plant Samples
Total Samples	5

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43187]	16S ribosomal RNA gene sequences	KY349160	1473	ENA	1416969 tax ID
[Ref.: #43187]	16S ribosomal RNA gene sequences	KY349161	1473	ENA	1416969 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Natrinema mahii H13	GCA_000690595	scaffold	GenBank	1416969 tax ID	*
[Ref.: #66792]	Haloterrigena mahii H13	2853959580	draft	JGI IMG/M	1416969 tax ID	*

[Ref.: #43187]

GC-content

65.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Haloterrigena mahii H13 NCBI: GCA_000690595.2
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Haloterrigena mahii H13 NCBI: GCA_000690595.1
[Ref.: #69480]	motile	no	81.227	yes
[Ref.: #69480]	flagellated	no	95.813	yes
[Ref.: #69480]	gram-positive	no	97.089	yes
[Ref.: #69480]	anaerobic	no	95.579	no
[Ref.: #69480]	halophile	yes	90.564	yes
[Ref.: #69480]	spore-forming	no	91.893	no
[Ref.: #69480]	glucose-util	yes	89.067	no
[Ref.: #69480]	aerobic	yes	85.652	no
[Ref.: #69480]	thermophile	no	73.721	yes
[Ref.: #69480]	glucose-ferment	no	84.05	no
[Ref.: #69480]	motile	no	81.227	yes
[Ref.: #69480]	flagellated	no	95.813	yes
[Ref.: #69480]	gram-positive	no	97.089	yes
[Ref.: #69480]	anaerobic	no	95.579	no
[Ref.: #69480]	halophile	yes	90.564	yes
[Ref.: #69480]	spore-forming	no	91.893	no
[Ref.: #69480]	glucose-util	yes	89.067	no
[Ref.: #69480]	aerobic	yes	85.652	no
[Ref.: #69480]	thermophile	no	73.721	yes
[Ref.: #69480]	glucose-ferment	no	84.05	no

Availability in culture collections External links

[Ref.: #43187]

Culture collection no.

BCRC 910151, NBRC 111885

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloterrigena mahii sp. nov., an extremely halophilic archaeon from a solar saltern.	Ding JY, Chen SC, Lai MC, Liao TL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001811	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43187

Jiun-Yan Ding, Sheng-Chung Chen, Mei-Chin Lai and Tsai-Ling Liao: Haloterrigena mahii sp. nov., an extremely halophilic archaeon from a solar saltern. IJSEM 67: 1333 - 1338 2017 ( DOI 10.1099/ijsem.0.001811 , PubMed 28109205 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Haloterrigena mahii H13

Haloterrigena mahii H13

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