Name: Parapedobacter deserti N5SSJ16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140559

Type strain:

Species: Parapedobacter deserti

Strain Designation: N5SSJ16

Culture col. no.: KCTC 54216

NCBI tax ID(s): 1912957 (species)

Section

Parapedobacter deserti N5SSJ16 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Stems of Haloxylon ammodendron from Kumtag Desert, Xinjiang.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Parapedobacter*
	Species	**Parapedobacter deserti**
	Full Scientific Name (LPSN)	Parapedobacter deserti Liu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43290]	Gram stain	negative

[Ref.: #43290]	Cell length	0.7-1.4 µm

[Ref.: #43290]	Cell width	0.2-0.3 µm

[Ref.: #43290]	Cell shape	rod-shaped

[Ref.: #43290]	Motility	no

[Ref.: #43290]	Colony color	yellow/opaque
[Ref.: #43290]	Colony shape	circular
[Ref.: #43290]	Cultivation medium used	TSA agar (Difco)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43290]

Culture medium

TSA agar (Difco)

[Ref.: #43290]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43290]			growth	12-50 °C

	pH	Kind of pH		pH
[Ref.: #43290]			optimum	7
[Ref.: #43290]			growth	7-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43290]

Oxygen tolerance

aerobe

[Ref.: #43290]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43290]		NaCl		growth	0-4	%
[Ref.: #43290]		NaCl		optimum	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43290]	(R)-lactate ChEBI	+/-	assimilation
[Ref.: #43290]	(S)-lactate ChEBI	+/-	assimilation
[Ref.: #43290]	2-oxobutanoate ChEBI	+	assimilation
[Ref.: #43290]	4-hydroxy-L-proline ChEBI	+/-	assimilation
[Ref.: #43290]	acetate ChEBI	+	assimilation
[Ref.: #43290]	adipate ChEBI	-	assimilation
[Ref.: #43290]	alpha-D-glucose ChEBI	+	assimilation
[Ref.: #43290]	alpha-lactose ChEBI	+	assimilation
[Ref.: #43290]	casein	+	hydrolysis
[Ref.: #43290]	cellobiose ChEBI	+	assimilation
[Ref.: #43290]	D-fructose ChEBI	+	assimilation
[Ref.: #43290]	D-galactose ChEBI	+	assimilation
[Ref.: #43290]	D-galacturonic acid ChEBI	+	assimilation
[Ref.: #43290]	D-gluconate ChEBI	+	assimilation
[Ref.: #43290]	D-glucose ChEBI	+	assimilation
[Ref.: #43290]	D-glucuronate ChEBI	+	assimilation
[Ref.: #43290]	D-mannitol ChEBI	-	assimilation
[Ref.: #43290]	D-mannose ChEBI	+	assimilation
[Ref.: #43290]	D-sorbitol ChEBI	+/-	assimilation
[Ref.: #43290]	decanoate ChEBI	-	assimilation
[Ref.: #43290]	dextrin ChEBI	+	assimilation
[Ref.: #43290]	dextrin ChEBI	+/-	assimilation
[Ref.: #43290]	esculin ChEBI	+	hydrolysis
[Ref.: #43290]	gelatin ChEBI	-	hydrolysis
[Ref.: #43290]	gentiobiose ChEBI	+	assimilation
[Ref.: #43290]	glucose ChEBI	-	fermentation
[Ref.: #43290]	glucose 1-phosphate ChEBI	+/-	assimilation
[Ref.: #43290]	glycyl L-aspartic acid ChEBI	+/-	assimilation
[Ref.: #43290]	glycyl-l-glutamate ChEBI	+/-	assimilation
[Ref.: #43290]	L-alaninamide ChEBI	+	assimilation
[Ref.: #43290]	L-alanine ChEBI	+	assimilation
[Ref.: #43290]	L-alanylglycine ChEBI	+	assimilation
[Ref.: #43290]	L-arabinose ChEBI	+/-	assimilation
[Ref.: #43290]	L-arabinose ChEBI	+	assimilation
[Ref.: #43290]	L-asparagine ChEBI	+	assimilation
[Ref.: #43290]	L-aspartate ChEBI	+	assimilation
[Ref.: #43290]	L-glutamate ChEBI	+	assimilation
[Ref.: #43290]	L-leucine ChEBI	+/-	assimilation
[Ref.: #43290]	L-ornithine ChEBI	+	assimilation
[Ref.: #43290]	L-proline ChEBI	+/-	assimilation
[Ref.: #43290]	L-serine ChEBI	+	assimilation
[Ref.: #43290]	L-threonine ChEBI	+	assimilation
[Ref.: #43290]	lactulose ChEBI	+	assimilation
[Ref.: #43290]	malate ChEBI	-	assimilation
[Ref.: #43290]	maltose ChEBI	+	assimilation
[Ref.: #43290]	melibiose ChEBI	+	assimilation
[Ref.: #43290]	methyl D-glucoside ChEBI	+	assimilation
[Ref.: #43290]	methyl pyruvate ChEBI	+/-	assimilation
[Ref.: #43290]	monomethyl succinate ChEBI	+	assimilation
[Ref.: #43290]	N-acetylgalactosamine ChEBI	+/-	assimilation
[Ref.: #43290]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43290]	nitrate ChEBI	-	reduction
[Ref.: #43290]	phenylacetate ChEBI	-	assimilation
[Ref.: #43290]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43290]	raffinose ChEBI	+	assimilation
[Ref.: #43290]	sodium citrate ChEBI	-	assimilation
[Ref.: #43290]	starch ChEBI	-	hydrolysis
[Ref.: #43290]	succinate ChEBI	+/-	assimilation
[Ref.: #43290]	sucrose ChEBI	+	assimilation
[Ref.: #43290]	trehalose ChEBI	+	assimilation
[Ref.: #43290]	turanose ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43290]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43290]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43290]	beta-galactosidase	+	3.2.1.23
[Ref.: #43290]	catalase	+	1.11.1.6
[Ref.: #43290]	cytochrome oxidase	+/-	1.9.3.1
[Ref.: #43290]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43290]

Fatty acid	Percentage
C15:0 iso	53.2
C16:1 ω7c/C16:1 ω6c	20.9
C16:0 10-methyl/iso C17: 1 ω9c	10
C17:0 iso 3OH	4.2
C15:0 anteiso	3
C15:0 iso 3OH	2.3
C16:0	1.4
C11:0 iso	1.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43290]	Sample type/isolated from	Stems of Haloxylon ammodendron from Kumtag Desert, Xinjiang
[Ref.: #43290]	Geographic location (country and/or sea, region)	Kumtag Desert, Xinjiang, China
[Ref.: #43290]	Country	China
[Ref.: #43290]	Country ISO 3 Code	CHN
[Ref.: #43290]	Continent	Asia
[Ref.: #43290]	Enrichment culture	R2A agar (Difco)
[Ref.: #43290]	Enrichment culture duration	5-7
[Ref.: #43290]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Stem (Branch)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43290]	Parapedobacter sp. N5SSJ16 16S ribosomal RNA gene, partial sequence	KU973625	1413	GenBank	1912957 tax ID

[Ref.: #43290]

GC-content

45.8 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43290]

Culture collection no.

KCTC 54216

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parapedobacter deserti sp. nov., an endophytic bacterium isolated from Haloxylon ammodendron stems.	Liu L, Li L, Song Z, Wang S, Zhang J, Zhang X, Sun Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.001911	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43290

Lei Liu, Lubin Li, Zheng Song, Shiyan Wang, Jun Zhang, Xiaoxia Zhang and Qiwu Sun: Parapedobacter deserti sp. nov., an endophytic bacterium isolated from Haloxylon ammodendron stems. IJSEM 67: 2148 - 2152 2017 ( DOI 10.1099/ijsem.0.001911 , PubMed 28699863 )

* These data were automatically processed and therefore are not curated

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