Name: Perlucidibaca aquatica BK296
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140543

Type strain:

Species: Perlucidibaca aquatica

Strain Designation: BK296

Culture col. no.: KCTC 52162, JCM 31377

Strain history: <- Kiwoon Baek, NNIBR

NCBI tax ID(s): 1852776 (species)

Special Collections

Section

Perlucidibaca aquatica BK296 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Sohancheon limestone stream originated from Chodanggul Cave, Gangwon province, Korea.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Perlucidibaca*
	Species	**Perlucidibaca aquatica**
	Full Scientific Name (LPSN)	Perlucidibaca aquatica Baek et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43331]	Gram stain	negative

[Ref.: #43331]	Cell length	1.0-1.6 µm

[Ref.: #43331]	Cell width	0.5-0.7 µm

[Ref.: #43331]	Cell shape	rod-shaped

[Ref.: #43331]	Motility	no

[Ref.: #43331]	Colony size	0.5-1 mm
[Ref.: #43331]	Colony color	white
[Ref.: #43331]	Colony shape	circular
[Ref.: #43331]	Incubation period	5 days
[Ref.: #43331]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43331]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43331]

Culture medium growth

		Temperature
[Ref.: #43331]	optimum	30 °C
[Ref.: #43331]	growth	10-37 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43331]			optimum	7-8
[Ref.: #43331]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43331]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43331]		NaCl		growth	0-1	%
[Ref.: #43331]		NaCl		optimum	0	%

[Ref.: #43331]

Observation

quinone Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43331]	casein	-	hydrolysis
[Ref.: #43331]	dna ChEBI	-	hydrolysis
[Ref.: #43331]	esculin ChEBI	+	hydrolysis
[Ref.: #43331]	glucose ChEBI	-	fermentation
[Ref.: #43331]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43331]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #43331]	nitrate ChEBI	-	reduction
[Ref.: #43331]	sebacic acid ChEBI	+	oxidation
[Ref.: #43331]	starch ChEBI	-	hydrolysis
[Ref.: #43331]	succinate ChEBI	+	oxidation
[Ref.: #43331]	tween 40 ChEBI	+	oxidation
[Ref.: #43331]	tween 80 ChEBI	+	oxidation
[Ref.: #43331]	tyrosine ChEBI	-	hydrolysis
[Ref.: #43331]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43331]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43331]	acid phosphatase	+	3.1.3.2
[Ref.: #43331]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43331]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43331]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43331]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43331]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43331]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43331]	beta-galactosidase	-	3.2.1.23
[Ref.: #43331]	beta-glucosidase	-	3.2.1.21
[Ref.: #43331]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43331]	catalase	-	1.11.1.6
[Ref.: #43331]	cystine arylamidase	-	3.4.11.3
[Ref.: #43331]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43331]	esterase (C 4)	+
[Ref.: #43331]	esterase Lipase (C 8)	+
[Ref.: #43331]	leucine arylamidase	+	3.4.11.1
[Ref.: #43331]	lipase (C 14)	+
[Ref.: #43331]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43331]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43331]	trypsin	-	3.4.21.4
[Ref.: #43331]	urease	-	3.5.1.5
[Ref.: #43331]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43331]

Fatty acid	Percentage	ECL
C16:1ω7c / C16:1ω6c	21
C16:0	13.8
C12:0 3OH	13.2
C18:1ω7c / C18:1ω6c	12.8
C14:0	9.5
C12:0	9.1
C19:1ω6c / unknown 18.846	6.3
C18:0	6.3
Unknown 11.799	2.6	11799
unknown 12.484	1.4	12484
C10:0 2OH	1.3
C18:1ω9c	1.3
C10:0	1.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43331]	Sample type/isolated from	Sohancheon limestone stream originated from Chodanggul Cave, Gangwon province, Korea
[Ref.: #43331]	Geographic location (country and/or sea, region)	Sohancheon stream, Gangwon province
[Ref.: #43331]	Country	Korea
[Ref.: #43331]	Country ISO 3 Code	KOR
[Ref.: #43331]	Continent	Asia
[Ref.: #43331]	Geographic location	37.0000°/129.0000°
[Ref.: #43331]	Enrichment culture	R2A agar
[Ref.: #43331]	Enrichment culture duration	1 month

[Ref.: #67770]	Sample type/isolated from	Stream water from a limestone cave in Samcheok
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From fresh water
[Ref.: #67771]	Geographic location (country and/or sea, region)	Geundeok-myeon, Samcheok-si, Gangwon-do sohancheon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU984676 (>99% sequence identity) for Perlucidibaca aquatica subclade from Microbeatlas

Aquatic Samples	2905
Soil Samples	315
Animal Samples	637
Plant Samples	103
Total Samples	3960

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43331]	Perlucidibaca aquatica strain BK296 16S ribosomal RNA gene, partial sequence	KU984676		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Perlucidibaca aquatica BK296	GCA_001676655	contig	GenBank ENA	1852776 tax ID
[Ref.: #66792]	Perlucidibaca aquatica BK296	2791354891	draft	JGI IMG/M	1852776 tax ID	*

[Ref.: #67770]

GC-content

55.7 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #43331]

Culture collection no.

KCTC 52162, JCM 31377

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amnimonas aquatica gen. nov., sp. nov., Isolated from a Freshwater River.	Lee Y, Park HY, Jeon CO	Curr Microbiol	10.1007/s00284-019-01652-5	2019	*
Phylogeny	Perlucidibaca aquatica sp. nov., isolated from fresh water.	Baek K, Han JH, Lee MH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001940	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43331

Kiwoon Baek, Ji-Hye Han, Mi-Hwa Lee: Perlucidibaca aquatica sp. nov., isolated from fresh water. IJSEM 67: 2296 - 2300 2017 ( DOI 10.1099/ijsem.0.001940 , PubMed 28741994 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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