Acinetobacter colistiniresistens (CCM 8641, CIP 110478, CCUG 67966)

Name: Acinetobacter colistiniresistens (CCM 8641, CIP 110478, CCUG 67966)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140537

Type strain

Culture col. no. CCM 8641 CIP 110478 CCUG 67966 CNCTC 7573 DSM 107593 1 more

NCBI tax ID(s) 280145

Special Collections DSMZ CCUG CIP Literature strains

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Acinetobacter colistiniresistens CCM 8641 is an aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from catheter in Belgium prior 1990.

Gram-negative coccus-shaped colony-forming aerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 399463

NCTC 14468,DSM 107593,CCUG 67966,CIP 110478

@ref 20215

Last LPSN update 2025-12-16 10:03:37

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Acinetobacter

Species Acinetobacter colistiniresistens

Full scientific name Acinetobacter colistiniresistens Nemec et al. 2017

BacDive ID	Other strains from **Acinetobacter colistiniresistens** (2)	Type strain
138442	A. colistiniresistens CIP 110477, NIPH 1859, LMG 10627, CNCTC 7581, ...
141331	A. colistiniresistens CCUG 887, ATCC 17905, NCTC 10304, CIP 64.2, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape
43320	negative	coccus-shaped
125438	negative
125439	negative
118703	negative	rod-shaped

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Colony size	Colony color	Colony shape	Incubation period	Medium used
43320	beta	1	1-2 mm	grey-white	circular	1 day	Tryptic soy agar
63449						1 day

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
64859	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
43320	Tryptic soy agar
43320	Brain heart infusion broth
64859	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
118703	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43320	positive	growth	37	mesophilic
43320	negative	growth	41
43320	positive	growth	15-35
63449	positive	growth	30	mesophilic
64859	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43320	aerobe
63449	aerobe
125439	obligate aerobe

Antibiotic susceptibility testing

	Test 1
@ref	64859
Medium	Müller-Hinton Agar
Incubation temperature	30
Oxygen condition	aerob
Manual_annotation	1
	Inhibition zone diameter in mm
Ampicillin	10
Oxacillin	0
Penicillin G	0
Aztreonam	16
Ticarcillin	24
Cefotaxime	20
Ceftazidime	16
Ceftriaxone	20-22
Cefiderocol	30
Piperacillin/Tazobactam	22-24
Imipenem	36-38
Meropenem	28
Ciprofloxacin	30
Levofloxacin	30
Moxifloxacin	30
Ofloxacin	28-30
Amikacin	24
Gentamicin	20
Tetracycline	22
Tigecycline	18
Teicoplanin	0
Vancomycin	0
Polymyxin B	12
Colistin sulphate	6
Clindamycin	0
Erythromycin	14
Fosfomycin	20
Kanamycin	22-24
Chloramphenicol	10-12
Linezolid	0
Nitrofurantoin	0
Quinupristin/Dalfopristin	0
Rifampicin	14-16
Trimethoprim-sulfamethoxazole (1:19)	30

Spore formation

@ref	Spore formation	Confidence
125438		96.215
125439		97.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43320	62064 ChEBI	2,3-butanediol	-	growth
43320	17879 ChEBI	4-hydroxybenzoate	+	growth
43320	39150 ChEBI	4-oxopentanoate	-	growth
43320	30089 ChEBI	acetate	+	carbon source
43320	17128 ChEBI	adipate	-	growth
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
43320	28938 ChEBI	ammonium	+	nitrogen source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
43320	78208 ChEBI	azelaate	-	growth
43320	16150 ChEBI	benzoate	-	growth
43320	16958 ChEBI	beta-alanine	-	growth
43320	30719 ChEBI	citraconate	-	growth
43320	16947 ChEBI	citrate	+	carbon source
43320	8391 ChEBI	D-gluconate	-	growth
43320	17634 ChEBI	D-glucose	+	builds acid from
43320	17634 ChEBI	D-glucose	-	growth
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
43320	15588 ChEBI	D-malate	+	growth
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
43320	16988 ChEBI	D-ribose	-	growth
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
43320	16236 ChEBI	ethanol	-	growth
43320	16865 ChEBI	gamma-aminobutyric acid	-	growth
43320	5291 ChEBI	gelatin	+	hydrolysis
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
43320	58044 ChEBI	gentisate	+	growth
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
43320	30921 ChEBI	glutarate	-	growth
43320	18295 ChEBI	histamine	-	growth
43320	30849 ChEBI	L-arabinose	-	growth
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
43320	16467 ChEBI	L-arginine	+	carbon source
43320	29991 ChEBI	L-aspartate	-	growth
43320	29985 ChEBI	L-glutamate	+	carbon source
43320	15971 ChEBI	L-histidine	+	carbon source
43320	15603 ChEBI	L-leucine	-	growth
43320	15729 ChEBI	L-ornithine	+/-	growth
43320	17295 ChEBI	L-phenylalanine	+	growth
43320	30924 ChEBI	L-tartrate	-	growth
43320	24996 ChEBI	lactate	+	growth
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
43320	15792 ChEBI	malonate	-	growth
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
43320	18401 ChEBI	phenylacetate	+	growth
43320	17148 ChEBI	putrescine	-	growth
43320	15708 ChEBI	trans-aconitate	-	growth
43320	62517 ChEBI	tricarballylate	-	growth
43320	18123 ChEBI	trigonelline	-	growth
43320	16765 ChEBI	tryptamine	-	growth
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
43320	catalase	+	1.11.1.6
43320	cytochrome oxidase	-	1.9.3.1
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
64859	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	+	-	+	+	+	-
64859	-	-	+/-	-	-	-	+	-	-	-	-	-	-	-	-	+	-	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Medical device	#Catheter

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
43320	catheter in Belgium prior 1990	Belgium	BEL	Europe
63449	Human catheter	Belgium	BEL	Europe
64859	catheter, human	Belgium	BEL	Europe
118703	Human, Catheter	Belgium	BEL	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
118703	1	Risk group (French classification)
64859	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Acin_sp_NIPH_2036_V1 assembly for Acinetobacter colistiniresistens NIPH 2036	scaffold	GCA_000413935	1217696.3	2565956665	280145	74.36

Genome browser: GCA_000413935

GC content

@ref	GC-content (mol%)
43320	41.3
64859	41.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acinetobacter colistiniresistens NIPH 2036
NCBI: GCA_000413935

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.40	no
125439	gram_stain	BacteriaNetⓘ	negative	92.70	no
125439	motility	BacteriaNetⓘ	no	56.80	no
125439	spore_formation	BacteriaNetⓘ	no	97.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acinetobacter colistiniresistens NIPH 2036
NCBI: GCA_000413935.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	97.43	yes
125438	aerobic	aerobicⓘ	yes	89.52	yes
125438	spore-forming	spore-formingⓘ	no	96.22	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	no	75.32	no

Literature

Title	Authors	Journal	DOI	Year
Identification and characterisation of colistin-resistant Acinetobacter colistiniresistens co-producing IMP-1 and OXA-58 carbapenemases.	Nishida S, Ono Y.	New Microbes New Infect	10.1016/j.nmni.2024.101484	2024
Fungicide sensitivity of grapevine bacteria with plant growth-promoting traits and antagonistic activity as non-target microorganisms.	Andreolli M, Lampis S, Tosi L, Marano V, Zapparoli G.	World J Microbiol Biotechnol	10.1007/s11274-023-03569-5	2023
In silico design and validation of a highly degenerate primer pair: a systematic approach.	Chukwuemeka PO, Umar HI, Olukunle OF, Oretade OM, Olowosoke CB, Akinsola EO, Elabiyi MO, Kurmi UG, Eigbe JO, Oyelere BR, Isunu LE, Oretade OJ.	J Genet Eng Biotechnol	10.1186/s43141-020-00086-y	2020
Acinetobacter colistiniresistens sp. nov. (formerly genomic species 13 sensu Bouvet and Jeanjean and genomic species 14 sensu Tjernberg and Ursing), isolated from human infections and characterized by intrinsic resistance to polymyxins.	Nemec A, Radolfova-Krizova L, Maixnerova M, Sedo O	Int J Syst Evol Microbiol	10.1099/ijsem.0.001903	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43320	Alexandr Nemec, Lenka Radolfova-Krizova, Martina Maixnerova, Ondrej Sedo: Acinetobacter colistiniresistens sp. nov. (formerly genomic species 13 sensu Bouvet and Jeanjean and genomic species 14 sensu Tjernberg and Ursing), isolated from human infections and characterized by intrinsic resistance to polymyxins. IJSEM 67: 2134 - 2141 2017 ( DOI 10.1099/ijsem.0.001903 , PubMed 28671519 )
#63449	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 67966
#64859	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107593
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#118703	Collection of Institut Pasteur ; Curators of the CIP; CIP 110478
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acinetobacter colistiniresistens (CCM 8641, CIP 110478, CCUG 67966)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Antibiotic susceptibility testing

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000413935

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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