Aliidiomarina sedimenti (CECT 8340, IBRC-M 10764, GBSy1)

Name: Aliidiomarina sedimenti (CECT 8340, IBRC-M 10764, GBSy1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140532

Type strain

Strain Designation GBSy1

Culture col. no. CECT 8340 IBRC-M 10764 GBSy1

NCBI tax ID(s) 1933879

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Aliidiomarina sedimenti GBSy1 is an aerobe, heterotroph, mesophilic prokaryote that forms circular colonies and was isolated from sediment sample from rhe coastal-marine Gomishan wetland in Iran .

Gram-negative motile rod-shaped colony-forming aerobe heterotroph mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 137772

CECT 8340

@ref 20215

Last LPSN update 2025-12-16 10:03:37

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Idiomarinaceae

Genus Aliidiomarina

Species Aliidiomarina sedimenti

Full scientific name Aliidiomarina sedimenti Shahinpei et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
43316	negative	1.2-2.7 µm	0.3-0.4 µm	rod-shaped		polar
43316				curved-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43316	1-2 mm	translucent	circular	1 day	R2A

Culture and growth conditions

Culture medium

@ref	Name	Composition
43316	Reasoner's 2A agar (R2A)	with 5% NaCl, pH 8,5
43316	modified alkaliphilic halophile agar (MAHA)	with with 5 % (w/v) total salts: (g/L) NaCl, 30.0; peptone, 5.0; yeast extract, 2.0; meat extract, 1.0; tri-sodium citrate, 0.12; KCl, 0.08; MgSO4.7H2O, 0.04; FeSO4.7H2O, 2.0 mg; MnCl2.4H2O, 0.36 mg; and agar, 15.0, Sodium sesquicarbonate solution (g/L) Na2CO3, 10.6; and NaHCO3, 8.42 was added to obtain alkaline conditions, after sterilization in an autoclave, pH 9,5
43316	Mueller-Hinton agar	plus 5% (w/v) sea salts, pH 8,5

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43316	positive	optimum	34	mesophilic
43316	positive	growth	4-40

Culture pH

@ref	Ability	Type	PH
43316	positive	optimum	8.5
43316	positive	growth	7-10

Physiology and metabolism

Oxygen tolerance

43316

Oxygen toleranceaerobe

Nutrition type

43316

Typeheterotroph

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43316	NaCl	positive	growth	1-15 %
43316	NaCl	positive	optimum	5 %

Observation

43316

Observationquinone Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43316	18240 ChEBI	4-hydroxy-L-proline	-	carbon source
43316		casein	+	hydrolysis
43316	17057 ChEBI	cellobiose	-	carbon source
43316	16947 ChEBI	citrate	-	carbon source
43316	18333 ChEBI	D-arabitol	-	carbon source
43316	12936 ChEBI	D-galactose	-	carbon source
43316	12936 ChEBI	D-galactose	-	builds acid from
43316	17634 ChEBI	D-glucose	-	carbon source
43316	17634 ChEBI	D-glucose	-	builds acid from
43316	16899 ChEBI	D-mannitol	-	carbon source
43316	16899 ChEBI	D-mannitol	-	builds acid from
43316	16024 ChEBI	D-mannose	-	carbon source
43316	16024 ChEBI	D-mannose	-	builds acid from
43316	16988 ChEBI	D-ribose	-	builds acid from
43316	17924 ChEBI	D-sorbitol	-	builds acid from
43316	65327 ChEBI	D-xylose	-	carbon source
43316	65327 ChEBI	D-xylose	-	builds acid from
43316	16991 ChEBI	dna	+	hydrolysis
43316	4853 ChEBI	esculin	-	hydrolysis
43316	4853 ChEBI	esculin	-	carbon source
43316	5291 ChEBI	gelatin	-	hydrolysis
43316	24297 ChEBI	glucuronate	-	carbon source
43316	15428 ChEBI	glycine	-	carbon source
43316	16977 ChEBI	L-alanine	-	carbon source
43316	30849 ChEBI	L-arabinose	-	carbon source
43316	30849 ChEBI	L-arabinose	-	builds acid from
43316	16467 ChEBI	L-arginine	-	carbon source
43316	29991 ChEBI	L-aspartate	-	carbon source
43316	17561 ChEBI	L-cysteine	-	carbon source
43316	29985 ChEBI	L-glutamate	-	carbon source
43316	18050 ChEBI	L-glutamine	-	carbon source
43316	15971 ChEBI	L-histidine	-	carbon source
43316	17191 ChEBI	L-isoleucine	-	carbon source
43316	15603 ChEBI	L-leucine	-	carbon source
43316	16643 ChEBI	L-methionine	-	carbon source
43316	15729 ChEBI	L-ornithine	-	carbon source
43316	17295 ChEBI	L-phenylalanine	-	carbon source
43316	17203 ChEBI	L-proline	-	carbon source
43316	62345 ChEBI	L-rhamnose	-	carbon source
43316	17115 ChEBI	L-serine	-	carbon source
43316	16857 ChEBI	L-threonine	-	carbon source
43316	17895 ChEBI	L-tyrosine	-	carbon source
43316	17716 ChEBI	lactose	-	carbon source
43316	17306 ChEBI	maltose	-	carbon source
43316		maltose hydrate	-	builds acid from
43316	6731 ChEBI	melezitose	-	carbon source
43316	17268 ChEBI	myo-inositol	-	carbon source
43316	17268 ChEBI	myo-inositol	-	builds acid from
43316	17632 ChEBI	nitrate	-	reduction
43316	16301 ChEBI	nitrite	-	reduction
43316	16634 ChEBI	raffinose	-	carbon source
43316	16634 ChEBI	raffinose	-	builds acid from
43316	33942 ChEBI	ribose	-	carbon source
43316	17814 ChEBI	salicin	-	carbon source
43316	17814 ChEBI	salicin	-	builds acid from
43316	30911 ChEBI	sorbitol	-	carbon source
43316	28017 ChEBI	starch	-	hydrolysis
43316	28017 ChEBI	starch	-	carbon source
43316	30031 ChEBI	succinate	-	carbon source
43316	17992 ChEBI	sucrose	-	builds acid from
43316	27082 ChEBI	trehalose	-	carbon source
43316	27082 ChEBI	trehalose	-	builds acid from
43316	53424 ChEBI	tween 20	+	hydrolysis
43316	53423 ChEBI	tween 40	+	hydrolysis
43316	53426 ChEBI	tween 80	+	hydrolysis
43316	18186 ChEBI	tyrosine	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
43316	2637	amikacin	30 µg (disc)
43316	2676	amoxicillin	30 µg (disc)
43316	28971	ampicillin
43316	3393	carbenicillin	100 µg (disc)
43316	17698	chloramphenicol	30 µg (disc)
43316	48923	erythromycin	15 µg (disc)
43316	17833	gentamicin	10 µg (disc)
43316	6104	kanamycin
43316	100147	nalidixic acid	30 µg (disc)
43316	71415	nitrofurantoin	300 µg (disc)
43316	18208	penicillin g
43316	8309	polymyxin b	300 Unit
43316	28077	rifampicin	5 µg (disc)
43316	17076	streptomycin	10 µg (disc)
43316	28864	tobramycin	10 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43316	16136 ChEBI	hydrogen sulfide
43316	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43316	arginine dihydrolase	-	3.5.3.6
43316	catalase	+	1.11.1.6
43316	cytochrome oxidase	+	1.9.3.1
43316	ornithine decarboxylase	-	4.1.1.17

Fatty acid profile

Metadata FA analysis

@ref

43316

Fatty acid	Percentage
C11:0 iso 3OH	19.9
C15:0 iso	19.4
C17:0 iso	7.1
iso-C17:0ω9c	6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Wetland (Swamp)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43316	sediment sample from rhe coastal-marine Gomishan wetland in Iran (pH 8.5-9.3, salinity 3-5 %)	Gomishan wetland	Iran	IRN	Asia	7	54 7/54

Taxonmaps

69479

Global distribution of 16S sequence KU870747 (>99% sequence identity) for Aliidiomarina from Microbeatlas

Aquatic Samples	25
Soil Samples	20
Animal Samples	101
Plant Samples
Total Samples	146

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM398695v1 assembly for Aliidiomarina sedimenti GBSy1	contig	GCA_003986955	1933879.3	2890096513	1933879	75.45

Genome browser: GCA_003986955

16S sequences

@ref	Description	Accession	Database
43316	Aliidiomarina sedimenti strain GBSy1 16S ribosomal RNA gene, partial sequence	KU870747

GC content

@ref	GC-content (mol%)	Method
43316	51.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aliidiomarina sedimenti GBSy1
NCBI: GCA_003986955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	87.60	no
125439	motility	BacteriaNetⓘ	yes	64.10	no
125439	gram_stain	BacteriaNetⓘ	negative	74.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	84.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliidiomarina sedimenti sp. nov., a haloalkaliphilic bacterium in the family Idiomarinaceae.	Shahinpei A, Amoozegar MA, Shahzadeh Fazeli SA, Schumann P, Sproer C, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijsem.0.001772	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43316	Azadeh Shahinpei, Mohammad Ali Amoozegar, Seyed Abolhassan Shahzadeh Fazeli, Peter Schumann, Cathrin Spröer, Antonio Ventosa: Aliidiomarina sedimenti sp. nov., a haloalkaliphilic bacterium in the family Idiomarinaceae. IJSEM 67: 2087 - 2092 2017 ( DOI 10.1099/ijsem.0.001772 , PubMed 28056220 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aliidiomarina sedimenti (CECT 8340, IBRC-M 10764, GBSy1)

Name and taxonomic classification