Paenibacillus tritici (CECT 9125, LMG 29502, RTAE36)

Name: Paenibacillus tritici (CECT 9125, LMG 29502, RTAE36)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140529

Type strain

Strain Designation RTAE36

Culture col. no. CECT 9125 LMG 29502 RTAE36

NCBI tax ID(s) 1873425

Special Collections Literature strains

Links

Paenibacillus tritici RTAE36 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from surface dinsinfected roots of wheat growing in a soil from León, Spain.

spore-forming Gram-positive motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 272630

LMG 29502,CECT 9125

@ref 20215

Last LPSN update 2026-05-29 08:39:44

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus tritici

Full scientific name Paenibacillus tritici Menéndez et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement	Confidence
43309	positive	2.5-2.9 µm	0.6-0.9 µm	rod-shaped		peritrichous
125439							90.09

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
43309	1-3 mm	white-cream	circular	Nutrient agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43309	TSA medium
43309	Nutrient broth
43309	Nutrient agar (NA)

Culture temp

@ref	Growth	Type	Temperature (°C)
43309	positive	optimum	30
43309	positive	growth	15-45

Culture pH

@ref	Ability	Type	PH
43309	positive	optimum	7
43309	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43309	aerobe
125439	facultative anaerobe	94.255

Spore formation

@ref	Spore description	Type of spore	Confidence
43309	oval subterminal endospores	endospore
125438			93.481
125439			96.669

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43309	NaCl	positive	growth	5 %

Observation

@ref	Observation
43309	quinone MK-7
43309	meso-DAP

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43309	17128 ChEBI	adipate	-	assimilation
43309	27613 ChEBI	amygdalin	+	builds acid from
43309	18305 ChEBI	arbutin	+	hydrolysis
43309		casein	-	hydrolysis
43309	17057 ChEBI	cellobiose	+	builds acid from
43309	16947 ChEBI	citrate	-	assimilation
43309	17108 ChEBI	D-arabinose	-	builds acid from
43309	18333 ChEBI	D-arabitol	-	builds acid from
43309	15824 ChEBI	D-fructose	+	builds acid from
43309	28847 ChEBI	D-fucose	-	builds acid from
43309	12936 ChEBI	D-galactose	+	builds acid from
43309	17634 ChEBI	D-glucose	+	builds acid from
43309	16899 ChEBI	D-mannitol	+	builds acid from
43309	16024 ChEBI	D-mannose	+	builds acid from
43309	16988 ChEBI	D-ribose	-	builds acid from
43309	16443 ChEBI	D-tagatose	-	builds acid from
43309	65327 ChEBI	D-xylose	+	builds acid from
43309	27689 ChEBI	decanoate	-	assimilation
43309	17113 ChEBI	erythritol	-	builds acid from
43309	4853 ChEBI	esculin	+	hydrolysis
43309	16813 ChEBI	galactitol	-	builds acid from
43309	28066 ChEBI	gentiobiose	+	builds acid from
43309	24265 ChEBI	gluconate	+	assimilation
43309	17234 ChEBI	glucose	+	assimilation
43309	17234 ChEBI	glucose	+	builds acid from
43309	17234 ChEBI	glucose	-	builds gas from
43309	17754 ChEBI	glycerol	+	builds acid from
43309	28087 ChEBI	glycogen	+	builds acid from
43309	35581 ChEBI	indole	-
43309	15443 ChEBI	inulin	-	builds acid from
43309	30849 ChEBI	L-arabinose	+	assimilation
43309	30849 ChEBI	L-arabinose	+	builds acid from
43309	18403 ChEBI	L-arabitol	-	builds acid from
43309	18287 ChEBI	L-fucose	-	builds acid from
43309	62320 ChEBI	L-lyxose	-	builds acid from
43309	15589 ChEBI	L-malate	-	assimilation
43309	62345 ChEBI	L-rhamnose	-	builds acid from
43309	17266 ChEBI	L-sorbose	-	builds acid from
43309	65328 ChEBI	L-xylose	-	builds acid from
43309	17716 ChEBI	lactose	+	builds acid from
43309	17306 ChEBI	maltose	-	assimilation
43309	17306 ChEBI	maltose	+	builds acid from
43309	29864 ChEBI	mannitol	-	assimilation
43309	37684 ChEBI	mannose	+	assimilation
43309	6731 ChEBI	melezitose	-	builds acid from
43309	28053 ChEBI	melibiose	+	builds acid from
43309	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
43309	43943 ChEBI	methyl alpha-D-mannoside	+	builds acid from
43309		methyl alpha-D-xylopyranoside	-	builds acid from
43309	17268 ChEBI	myo-inositol	-	builds acid from
43309	506227 ChEBI	N-acetylglucosamine	-	assimilation
43309	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43309	17632 ChEBI	nitrate	+	reduction
43309	18401 ChEBI	phenylacetate	-	assimilation
43309	16634 ChEBI	raffinose	+	builds acid from
43309	15963 ChEBI	ribitol	-	builds acid from
43309	17814 ChEBI	salicin	+	builds acid from
43309	30911 ChEBI	sorbitol	-	builds acid from
43309	28017 ChEBI	starch	+	builds acid from
43309	17992 ChEBI	sucrose	+	builds acid from
43309	27082 ChEBI	trehalose	+	builds acid from
43309	32528 ChEBI	turanose	+	builds acid from
43309	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
43309	15688 ChEBI	acetoin
43309	16136 ChEBI	hydrogen sulfide
43309	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
43309	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
43309	amylase	-
43309	arginine dihydrolase	-	3.5.3.6
43309	beta-galactosidase	+	3.2.1.23
43309	caseinase	-	3.4.21.50
43309	catalase	+	1.11.1.6
43309	cytochrome oxidase	+	1.9.3.1
43309	gelatinase	-
43309	lysine decarboxylase	-	4.1.1.18
43309	ornithine decarboxylase	-	4.1.1.17
43309	phenylalanine deaminase	-	4.3.1.5
43309	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

43309

Fatty acid	Percentage
C15:0 anteiso	39.6
C16:0	16.5
C14:0 iso	14.3
C16:0 iso	10.6
C14:0	9
C15:0 iso	3
C18:0	1.3
C17:0 anteiso	1.1
C16:1ω7c / C16:1ω6c	1.1
C12:0	0.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
43309	surface dinsinfected roots of wheat (Tricticum aestivum) growing in a soil from León, Spain	León	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence KX530777 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	238
Soil Samples	631
Animal Samples	232
Plant Samples	142
Total Samples	1243

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1320488v1 assembly for Paenibacillus tritici LMG 29502	scaffold	GCA_013204885	1873425.3	2971403814	1873425	67.9

16S sequences

@ref	Description	Accession	Database
43309	Paenibacillus tritici strain RTAE36 16S ribosomal RNA gene, partial sequence	KX530777

GC content

@ref	GC-content (mol%)	Method
43309	53.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1320488v1 assembly for Paenibacillus tritici LMG 29502
BV-BRC: 1873425.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	variable	71.67	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.26	no
125439	motility	BacteriaNetⓘ	yes	90.09	no
125439	spore_formation	BacteriaNetⓘ	yes	96.67	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus tritici LMG 29502
NCBI: GCA_013204885.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	63.94	yes
125438	anaerobic	anaerobicⓘ	no	95.49	yes
125438	aerobic	aerobicⓘ	no	52.84	yes
125438	spore-forming	spore-formingⓘ	yes	93.48	yes
125438	thermophilic	thermophileⓘ	no	94.94	yes
125438	flagellated	motile2+ⓘ	yes	85.17	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus tritici sp. nov., isolated from wheat roots.	Menendez E, Flores-Felix JD, Mulas R, Andres FG, Fernandez-Pascual M, Peix A, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijsem.0.001949	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43309	Esther Menéndez, José David Flores-Félix, Rebeca Mulas, Fernando González Andrés, Mercedes Fernández-Pascual, Alvaro Peix, Encarna Velázquez: Paenibacillus tritici sp. nov., isolated from wheat roots. IJSEM 67: 2312 - 2316 2017 ( DOI 10.1099/ijsem.0.001949 , PubMed 28699855 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus tritici (CECT 9125, LMG 29502, RTAE36)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_013204885

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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