Name: Muricauda marina H19-56
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140527

Type strain:

Species: Muricauda marina

Strain Designation: H19-56

Culture col. no.: KCTC 52374, MCCC 1K03196, JCM 31456, CGMCC 1.15774

Strain history: X.-H. Zhang and Y. Wang; Coll. of Mar. Life Sci., Ocean Univ. of China, China; H19-56.

NCBI tax ID(s): 1775168 (species)

Section

Muricauda marina H19-56 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from marine snow sample obtainded fron the Yellow Sea.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	Muricauda
	Species	Muricauda marina
	Full Scientific Name (LPSN)	Muricauda marina Su et al. 2017

Synonym

Allomuricauda marina

Information on morphological and physiological properties Morphology

[Ref.: #43301]	Gram stain	negative

[Ref.: #43301]	Cell length	1.8-6.0 µm

[Ref.: #43301]	Cell width	0.2-0.4 µm

[Ref.: #43301]	Cell shape	rod-shaped

[Ref.: #43301]	Motility	no

[Ref.: #43301]	Colony size	0.6-0.8 mm
[Ref.: #43301]	Colony color	light yellow, transparent
[Ref.: #43301]	Colony shape	circular
[Ref.: #43301]	Incubation period	3 days
[Ref.: #43301]	Cultivation medium used	Marine agar 2216

[Ref.: #43301]	Pigment production	no
[Ref.: #43301]	Pigment name	Flexirubin-type pigment
[Ref.: #43301]	Pigment production	yes
[Ref.: #43301]	Pigment name	Carotenoid pigment

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43301]

Culture medium

Marine agar (MA)

[Ref.: #43301]

Culture medium growth

		Temperature
[Ref.: #43301]	optimum	32 °C
[Ref.: #43301]	growth	16-45 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #43301]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43301]			optimum	8
[Ref.: #43301]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43301]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43301]		NaCl		growth	1-7	%(w/v)
[Ref.: #43301]		NaCl		optimum	3	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43301]	(R)-lactate ChEBI	+	carbon source
[Ref.: #43301]	(S)-lactate ChEBI	+	carbon source
[Ref.: #43301]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #43301]	3-O-methyl alpha-D-glucopyranoside	+	builds acid from
[Ref.: #43301]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #43301]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #43301]	acetate ChEBI	+	carbon source
[Ref.: #43301]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #43301]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43301]	amygdalin ChEBI	+	builds acid from
[Ref.: #43301]	arbutin ChEBI	+	builds acid from
[Ref.: #43301]	casein	-	hydrolysis
[Ref.: #43301]	cellobiose ChEBI	+	builds acid from
[Ref.: #43301]	cellobiose ChEBI	+	carbon source
[Ref.: #43301]	cellulose ChEBI	-	hydrolysis
[Ref.: #43301]	chitin ChEBI	-	hydrolysis
[Ref.: #43301]	citrate ChEBI	-	carbon source
[Ref.: #43301]	citrate ChEBI	+	carbon source
[Ref.: #43301]	D-alanine ChEBI	+	carbon source
[Ref.: #43301]	D-fructose ChEBI	+	carbon source
[Ref.: #43301]	D-fucose ChEBI	+	builds acid from
[Ref.: #43301]	D-galactose ChEBI	+	carbon source
[Ref.: #43301]	D-glucarate ChEBI	+	carbon source
[Ref.: #43301]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #43301]	D-lyxose ChEBI	+	builds acid from
[Ref.: #43301]	D-mannose ChEBI	+	carbon source
[Ref.: #43301]	D-tagatose ChEBI	+	builds acid from
[Ref.: #43301]	dna ChEBI	+	degradation
[Ref.: #43301]	esculin ChEBI	+	builds acid from
[Ref.: #43301]	gelatin ChEBI	+	degradation
[Ref.: #43301]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43301]	gentiobiose ChEBI	+	carbon source
[Ref.: #43301]	glucose ChEBI	+	builds acid from
[Ref.: #43301]	glycyl-L-bromosuccinic glutamic acid	+	carbon source
[Ref.: #43301]	inosine ChEBI	+	carbon source
[Ref.: #43301]	L-alaninamide ChEBI	+	carbon source
[Ref.: #43301]	L-alanine ChEBI	+	carbon source
[Ref.: #43301]	L-alanylglycine ChEBI	+	carbon source
[Ref.: #43301]	L-asparagine ChEBI	+	carbon source
[Ref.: #43301]	L-aspartate ChEBI	+	carbon source
[Ref.: #43301]	L-fucose ChEBI	+	builds acid from
[Ref.: #43301]	L-fucose ChEBI	+	carbon source
[Ref.: #43301]	L-glutamate ChEBI	+	carbon source
[Ref.: #43301]	L-leucine ChEBI	+	carbon source
[Ref.: #43301]	L-ornithine ChEBI	+	carbon source
[Ref.: #43301]	L-serine ChEBI	+	carbon source
[Ref.: #43301]	L-threonine ChEBI	+	carbon source
[Ref.: #43301]	lactose ChEBI	+	builds acid from
[Ref.: #43301]	lactose ChEBI	+	carbon source
[Ref.: #43301]	lactulose ChEBI	+	carbon source
[Ref.: #43301]	maltose ChEBI	+	builds acid from
[Ref.: #43301]	maltose ChEBI	+	carbon source
[Ref.: #43301]	melibiose ChEBI	+	carbon source
[Ref.: #43301]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #43301]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #43301]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #43301]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43301]	nitrite ChEBI	-	reduction
[Ref.: #43301]	phenylethylamine ChEBI	+	carbon source
[Ref.: #43301]	raffinose ChEBI	+	builds acid from
[Ref.: #43301]	raffinose ChEBI	+	carbon source
[Ref.: #43301]	salicin ChEBI	+	builds acid from
[Ref.: #43301]	starch ChEBI	+	degradation
[Ref.: #43301]	succinate ChEBI	+	carbon source
[Ref.: #43301]	sucrose ChEBI	+	builds acid from
[Ref.: #43301]	sucrose ChEBI	+	carbon source
[Ref.: #43301]	thymidine ChEBI	+	carbon source
[Ref.: #43301]	trehalose ChEBI	+	builds acid from
[Ref.: #43301]	trehalose ChEBI	+	carbon source
[Ref.: #43301]	turanose ChEBI	+	builds acid from
[Ref.: #43301]	turanose ChEBI	+	carbon source
[Ref.: #43301]	tween 20 ChEBI	+	degradation
[Ref.: #43301]	tween 40 ChEBI	+	degradation
[Ref.: #43301]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43301]	urea ChEBI	-	hydrolysis
[Ref.: #43301]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43301]	acetoin ChEBI	no
[Ref.: #43301]	hydrogen sulfide ChEBI	no
[Ref.: #43301]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43301]	acid phosphatase	+	3.1.3.2
[Ref.: #43301]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43301]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43301]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43301]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43301]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43301]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43301]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43301]	beta-galactosidase	-	3.2.1.23
[Ref.: #43301]	beta-glucosidase	+	3.2.1.21
[Ref.: #43301]	beta-glucosidase	-	3.2.1.21
[Ref.: #43301]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43301]	catalase	+	1.11.1.6
[Ref.: #43301]	cystine arylamidase	+	3.4.11.3
[Ref.: #43301]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43301]	esterase (C 4)	+
[Ref.: #43301]	leucine arylamidase	+	3.4.11.1
[Ref.: #43301]	lipase (C 14)	-
[Ref.: #43301]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43301]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43301]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43301]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43301]	trypsin	+	3.4.21.4
[Ref.: #43301]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43301]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43301]

Fatty acid	Percentage	ECL
C15:0 iso	29.8
C15:1 iso G	22.9
C17:0 iso 3OH	9.9
C16:1ω7c / iso C15:0 2-OH	7.4
Unknown 13.565	7.2	13565
C15:0	4.8
C17:1 iso ω9c	3.7
C16:0	1.3
Unknown 11.543	1	11543

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43301]	Sample type/isolated from	marine snow sample obtainded fron the Yellow Sea
[Ref.: #43301]	Sampling date	2015-08
[Ref.: #43301]	Geographic location (country and/or sea, region)	Yellow sea
[Ref.: #43301]	Country	China
[Ref.: #43301]	Country ISO 3 Code	CHN
[Ref.: #43301]	Continent	Asia
[Ref.: #43301]	Geographic location	34.0000°/121.0000°

[Ref.: #67770]	Sample type/isolated from	Surface marine snow sample collected from the Yellow Sea near China
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU315479 (>99% sequence identity) for Muricauda marina subclade from Microbeatlas

Aquatic Samples	44
Soil Samples	2
Animal Samples
Plant Samples	2
Total Samples	48

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43301]	16S rRNA gene sequence	KU315479		GenBank

[Ref.: #67770]

GC-content

43.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43301]

Culture collection no.

KCTC 52374, MCCC 1K03196, JCM 31456, CGMCC 1.15774

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Muricauda iocasae sp. nov., isolated from deep sea sediment of the South China Sea.	Liu SQ, Sun QL, Sun YY, Yu C, Sun L	Int J Syst Evol Microbiol	10.1099/ijsem.0.002870	2018	*
Phylogeny	Muricauda marina sp. nov., isolated from marine snow of Yellow Sea.	Su Y, Yang X, Wang Y, Liu Y, Ren Q, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001992	2017	*
Phylogeny	Muricauda ochracea sp. nov., isolated from a tidal flat in the Republic of Korea.	Kim D, Yoo Y, Khim JS, Yang D, Pathiraja D, Choi IG, Kim JJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004312	2020	*
Phylogeny	Muricauda indica sp. nov., isolated from deep sea water.	Zhang X, Liu X, Lai Q, Du Y, Sun F, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002602	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43301

Ying Su, Xiaoting Yang, Yanan Wang, Yuyang Liu, Qiaomeng Ren, Xiao-Hua Zhang: Muricauda marina sp. nov., isolated from marine snow of Yellow Sea. IJSEM 67: 2446 - 2451 2017 ( DOI 10.1099/ijsem.0.001992 , PubMed 28741993 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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