Name: Paenibacillus arachidis E3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140521

Type strain:

Species: Paenibacillus arachidis

Strain Designation: E3

Culture col. no.: KCTC 33574, LMG 28417

Strain history: <- Sadaf Kalam, Univ. of Hyderabad

NCBI tax ID(s): 1500780 (species)

Special Collections

Section

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Paenibacillus arachidis E3 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from groundnut seed.

Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus arachidis**
	Full Scientific Name (LPSN)	Paenibacillus arachidis Sadaf et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43081]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #43081]	Cell length	1.4-1.7 µm

[Ref.: #43081]	Cell width	0.5-0.7 µm

[Ref.: #43081]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43081]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #43081]	Colony color	white
[Ref.: #43081]	Cultivation medium used	LB

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43081]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43081]

Culture medium growth

		Temperature
[Ref.: #43081]	optimum	35 °C
[Ref.: #43081]	growth	30-40 °C
[Ref.: #67771]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #43081]			optimum	7.5
[Ref.: #43081]			growth	6.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43081]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43081]	Spore description	endospore
[Ref.: #43081]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43081]		NaCl		growth	0-2	%
[Ref.: #43081]		NaCl		optimum	2	%

[Ref.: #43081]

Observation

biofilm formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43081]	citrate ChEBI	-	carbon source
[Ref.: #43081]	D-fructose ChEBI	+	growth
[Ref.: #43081]	D-glucose ChEBI	+	growth
[Ref.: #43081]	D-mannitol ChEBI	-	growth
[Ref.: #43081]	D-ribose ChEBI	+	growth
[Ref.: #43081]	D-sorbitol ChEBI	+	growth
[Ref.: #43081]	gelatin ChEBI	+	hydrolysis
[Ref.: #43081]	glucose ChEBI	-	fermentation
[Ref.: #43081]	L-rhamnose ChEBI	-	growth
[Ref.: #43081]	maleic acid ChEBI	-	growth
[Ref.: #43081]	maltose ChEBI	-	growth
[Ref.: #43081]	myo-inositol ChEBI	-	growth
[Ref.: #43081]	N-acetylglucosamine ChEBI	+	growth
[Ref.: #43081]	sodium pyruvate ChEBI	+	growth
[Ref.: #43081]	starch ChEBI	+	hydrolysis
[Ref.: #43081]	starch ChEBI	+	growth
[Ref.: #43081]	sucrose ChEBI	+	growth
[Ref.: #43081]	trehalose ChEBI	+	growth
[Ref.: #43081]	urea ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43081]	acetoin ChEBI	no
[Ref.: #43081]	indole ChEBI	no
[Ref.: #43081]	siderophore ChEBI	yes

	Metabolite	Voges-Proskauer-test	Methylred-test	Citrate test
[Ref.: #43081]	acetoin ChEBI	-
[Ref.: #43081]	citrate ChEBI			-
[Ref.: #43081]	glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43081]	acid phosphatase	+	3.1.3.2
[Ref.: #43081]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43081]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43081]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43081]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43081]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43081]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43081]	beta-galactosidase	+	3.2.1.23
[Ref.: #43081]	beta-glucosidase	-	3.2.1.21
[Ref.: #43081]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43081]	catalase	+	1.11.1.6
[Ref.: #43081]	chitinase	+	3.2.1.14
[Ref.: #43081]	cystine arylamidase	-	3.4.11.3
[Ref.: #43081]	esterase	+
[Ref.: #43081]	esterase Lipase (C 8)	-
[Ref.: #43081]	leucine arylamidase	-	3.4.11.1
[Ref.: #43081]	lipase (C 14)	-
[Ref.: #43081]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43081]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43081]	trypsin	-	3.4.21.4
[Ref.: #43081]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43081]	Sample type/isolated from	groundnut seed
[Ref.: #43081]	Enrichment culture	Luria Bertani (LB) agar
[Ref.: #43081]	Enrichment culture duration	5 days
[Ref.: #43081]	Enrichment culture temperature	37 ̊C

[Ref.: #67771]	Sample type/isolated from	From groundnut seeds
[Ref.: #67771]	Geographic location (country and/or sea, region)	Hyderabad
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Greenhouse
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ572789 (>99% sequence identity) for Paenibacillus arachidis subclade from Microbeatlas

Aquatic Samples
Soil Samples	9
Animal Samples	2
Plant Samples	3
Total Samples	14

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43081]	Paenibacillus arachidis strain E3 16S ribosomal RNA gene, partial sequence	KJ572789	1404	GenBank ENA	1500780 tax ID

[Ref.: #43081]	GC-content	53 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	53.0 mol%

Availability in culture collections External links

[Ref.: #43081]

Culture collection no.

KCTC 33574, LMG 28417

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus arachidis sp. nov., isolated from groundnut seeds.	Sadaf K, Tushar L, Nirosha P, Podile AR, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.001124	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43081

K. Sadaf, L. Tushar, P. Nirosha, A. R. Podile, Ch. Sasikala, Ch. V. Ramana: Paenibacillus arachidis sp. nov., isolated from groundnut seeds. IJSEM 66: 2923 - 2928 2016 ( DOI 10.1099/ijsem.0.001124 , PubMed 27129367 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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