Taibaiella soli (JCM 31014, KCTC 42277, T1-10)

Name: Taibaiella soli (JCM 31014, KCTC 42277, T1-10)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140520

Type strain

Strain Designation T1-10

Culture col. no. JCM 31014 KCTC 42277 T1-10

NCBI tax ID(s) 1649169

Special Collections JCM KCTC Literature strains

History S. B. Kim; Chungnam Natl. Univ., South Korea; T1-10.

Links

Taibaiella soli T1-10 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from soil sample from a pine forest.

Gram-negative motile ovoid-shaped colony-forming obligate aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 26596

KCTC 42277,JCM 31014

@ref 20215

Last LPSN update 2026-02-09 11:33:38

Domain Bacteria

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Taibaiella

Species Taibaiella soli

Full scientific name Taibaiella soli Kim et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
43100	negative	1.0-2.0 µm	0.9-1.1 µm	ovoid-shaped		gliding

Colony morphology

@ref	Colony color	Colony shape	Medium used
43100	yellow	circular	tryptic soy agar (TSA)

Pigmentation

@ref	Production	Name
43100		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
43100	tryptic soy agar (TSA)
43100	nutritient agar (NA)
43100	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)
43100	positive	optimum	30
43100	positive	growth	10-37
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
43100	positive	optimum	7
43100	positive	growth	6-7

Physiology and metabolism

Oxygen tolerance

43100

Oxygen toleranceobligate aerobe

Spore formation

43100

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43100	NaCl	positive	growth	0-1.0 %(w/v)
43100	NaCl	positive	optimum	0 %(w/v)

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43100	17128 ChEBI	adipate	-	assimilation
43100	15903 ChEBI	beta-d-glucose	-	assimilation
43100	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43100		casein	-	hydrolysis
43100	16899 ChEBI	D-mannitol	-	assimilation
43100	16024 ChEBI	D-mannose	-	assimilation
43100	27689 ChEBI	decanoate	-	assimilation
43100	4853 ChEBI	esculin	+	hydrolysis
43100	5291 ChEBI	gelatin	-	hydrolysis
43100	30849 ChEBI	L-arabinose	-	assimilation
43100	25115 ChEBI	malate	-	assimilation
43100	17306 ChEBI	maltose	-	assimilation
43100	506227 ChEBI	N-acetylglucosamine	-	assimilation
43100	17632 ChEBI	nitrate	-	reduction
43100	18401 ChEBI	phenylacetate	-	assimilation
43100	32032 ChEBI	potassium gluconate	-	assimilation
43100	53258 ChEBI	sodium citrate	-	assimilation
43100	28017 ChEBI	starch	-	hydrolysis
43100	53426 ChEBI	tween 80	-	hydrolysis

Enzymes

@ref	Value	Activity	Ec
43100	acid phosphatase	+	3.1.3.2
43100	alkaline phosphatase	+	3.1.3.1
43100	alpha-chymotrypsin	-	3.4.21.1
43100	alpha-fucosidase	-	3.2.1.51
43100	alpha-galactosidase	-	3.2.1.22
43100	alpha-glucosidase	-	3.2.1.20
43100	alpha-mannosidase	-	3.2.1.24
43100	beta-galactosidase	-	3.2.1.23
43100	beta-glucosidase	-	3.2.1.21
43100	beta-glucuronidase	-	3.2.1.31
43100	catalase	+	1.11.1.6
43100	cystine arylamidase	-	3.4.11.3
43100	cytochrome oxidase	+	1.9.3.1
43100	esterase Lipase (C 8)	+
43100	leucine arylamidase	+	3.4.11.1
43100	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43100	naphthol-AS-BI-phosphohydrolase	+
43100	trypsin	+	3.4.21.4
43100	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	acetate fermentation	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	CMP-KDO biosynthesis	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	palmitate biosynthesis	95.45	21 of 22
66794	NAD metabolism	94.44	17 of 18
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	pentose phosphate pathway	81.82	9 of 11
66794	lipid metabolism	80.65	25 of 31
66794	cellulose degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	phenylalanine metabolism	76.92	10 of 13
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	glycogen biosynthesis	75	3 of 4
66794	purine metabolism	74.47	70 of 94
66794	histidine metabolism	72.41	21 of 29
66794	alanine metabolism	72.41	21 of 29
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	propionate fermentation	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	acetoin degradation	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	tryptophan metabolism	65.79	25 of 38
66794	photosynthesis	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	vitamin B6 metabolism	63.64	7 of 11
66794	isoleucine metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	methylglyoxal degradation	60	3 of 5
66794	coenzyme M biosynthesis	60	6 of 10
66794	glycolysis	58.82	10 of 17
66794	non-pathway related	57.89	22 of 38
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	propanol degradation	57.14	4 of 7
66794	valine metabolism	55.56	5 of 9
66794	urea cycle	53.85	7 of 13
66794	lysine metabolism	52.38	22 of 42
66794	Entner Doudoroff pathway	50	5 of 10
66794	threonine metabolism	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	phenol degradation	50	10 of 20
66794	phenylmercury acetate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	starch degradation	50	5 of 10
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	arginine metabolism	50	12 of 24
66794	catecholamine biosynthesis	50	2 of 4
66794	tyrosine metabolism	50	7 of 14
66794	sulfate reduction	46.15	6 of 13
66794	oxidative phosphorylation	40.66	37 of 91
66794	glycine betaine biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	ketogluconate metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	proline metabolism	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	enterobactin biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	pantothenate biosynthesis	33.33	2 of 6
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	degradation of pentoses	32.14	9 of 28
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	carotenoid biosynthesis	22.73	5 of 22
66794	ascorbate metabolism	22.73	5 of 22
66794	allantoin degradation	22.22	2 of 9
66794	chlorophyll metabolism	22.22	4 of 18
66794	glutathione metabolism	21.43	3 of 14

Fatty acid profile

Metadata FA analysis

@ref

43100

Fatty acid	Percentage
C15:1 iso G	29.5
C15:0 iso	27
C17:0 iso 3OH	11.7
C15:0 anteiso	4.5
C17:0 iso	4.4
C16:1ω11c	4.3
C15:0 iso 3OH	3.5
C17:1 anteiso A	2.9
C17:0 anteiso	2.7
C15:0 2OH	2
C15:1 anteiso A	1.9
C16:0	1.8
C16:1ω5c	1.5
anteiso-C17:1B/iso-C17:1I	1.5
C17:0 2OH	1.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation date
43100	soil sample from a pine forest	Daejeon	Republic of Korea	KOR	Asia	36	127 36/127	tryptic soy agar (TSA; BD)	7 days	30	serial dilut
67770	Pine forest soil inhabited by white heron in Daejeon		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KR078254 (>99% sequence identity) for Taibaiella soli subclade from Microbeatlas

Aquatic Samples	18
Soil Samples	148
Animal Samples	33
Plant Samples	76
Total Samples	275

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43100	Taibaiella soli strain T1-10 16S ribosomal RNA gene, partial sequence	KR078254	1467		1649169

GC content

@ref	GC-content (mol%)	Method
43100	42.5	Thermal denaturation, fluorometry
67770	42.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taibaiella helva sp. nov., isolated from farmland soil in China.	Chen LL, Hu T, Xing ZY, Lu JS, Yang H, Huang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003281	2019
Phylogeny	Taibaiella soli sp. nov., isolated from pine forest soil.	Kim MK, Kim TS, Joung Y, Han JH, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.001172	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43100	Min-Kyeong Kim, Tae-Su Kim, Yochan Joung, Ji-Hye Han, Seung Bum Kim: Taibaiella soli sp. nov., isolated from pine forest soil. IJSEM 66: 3230 - 3234 2016 ( DOI 10.1099/ijsem.0.001172 , PubMed 27222401 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Taibaiella soli (JCM 31014, KCTC 42277, T1-10)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Pathway annotation

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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