Name: Taibaiella soli T1-10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140520

Type strain:

Species: Taibaiella soli

Strain Designation: T1-10

Culture col. no.: JCM 31014, KCTC 42277

Strain history: S. B. Kim; Chungnam Natl. Univ., South Korea; T1-10.

NCBI tax ID(s): 1649169 (species)

Special Collections

Section

Taibaiella soli T1-10 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from soil sample from a pine forest.

colony-forming
Gram-negative
motile
ovoid-shaped
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Taibaiella*
	Species	**Taibaiella soli**
	Full Scientific Name (LPSN)	Taibaiella soli Kim et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43100]	Gram stain	negative

[Ref.: #43100]	Cell length	1.0-2.0 µm

[Ref.: #43100]	Cell width	0.9-1.1 µm

[Ref.: #43100]	Cell shape	ovoid-shaped

[Ref.: #43100]	Motility	yes

[Ref.: #43100]	Flagellum arrangement	gliding

[Ref.: #43100]	Colony color	yellow
[Ref.: #43100]	Colony shape	circular
[Ref.: #43100]	Cultivation medium used	tryptic soy agar (TSA)

[Ref.: #43100]	Pigment production	yes
[Ref.: #43100]	Pigment name	Flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43100]

Culture medium

tryptic soy agar (TSA)

[Ref.: #43100]

Culture medium growth

[Ref.: #43100]

Culture medium

nutritient agar (NA)

[Ref.: #43100]

Culture medium growth

[Ref.: #43100]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43100]

Culture medium growth

		Temperature
[Ref.: #43100]	optimum	30 °C
[Ref.: #43100]	growth	10-37 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43100]			optimum	7
[Ref.: #43100]			growth	6-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43100]

Oxygen tolerance

obligate aerobe

[Ref.: #43100]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43100]		NaCl		growth	0-1.0	%(w/v)
[Ref.: #43100]		NaCl		optimum	0	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43100]	adipate ChEBI	-	assimilation
[Ref.: #43100]	beta-d-glucose ChEBI	-	assimilation
[Ref.: #43100]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43100]	casein	-	hydrolysis
[Ref.: #43100]	D-mannitol ChEBI	-	assimilation
[Ref.: #43100]	D-mannose ChEBI	-	assimilation
[Ref.: #43100]	decanoate ChEBI	-	assimilation
[Ref.: #43100]	esculin ChEBI	+	hydrolysis
[Ref.: #43100]	gelatin ChEBI	-	hydrolysis
[Ref.: #43100]	L-arabinose ChEBI	-	assimilation
[Ref.: #43100]	malate ChEBI	-	assimilation
[Ref.: #43100]	maltose ChEBI	-	assimilation
[Ref.: #43100]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43100]	nitrate ChEBI	-	reduction
[Ref.: #43100]	phenylacetate ChEBI	-	assimilation
[Ref.: #43100]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43100]	sodium citrate ChEBI	-	assimilation
[Ref.: #43100]	starch ChEBI	-	hydrolysis
[Ref.: #43100]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43100]	acid phosphatase	+	3.1.3.2
[Ref.: #43100]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43100]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43100]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43100]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43100]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43100]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43100]	beta-galactosidase	-	3.2.1.23
[Ref.: #43100]	beta-glucosidase	-	3.2.1.21
[Ref.: #43100]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43100]	catalase	+	1.11.1.6
[Ref.: #43100]	cystine arylamidase	-	3.4.11.3
[Ref.: #43100]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43100]	esterase Lipase (C 8)	+
[Ref.: #43100]	leucine arylamidase	+	3.4.11.1
[Ref.: #43100]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43100]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43100]	trypsin	+	3.4.21.4
[Ref.: #43100]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43100]

Fatty acid	Percentage
C15:1 iso G	29.5
C15:0 iso	27
C17:0 iso 3OH	11.7
C15:0 anteiso	4.5
C17:0 iso	4.4
C16:1ω11c	4.3
C15:0 iso 3OH	3.5
C17:1 anteiso A	2.9
C17:0 anteiso	2.7
C15:0 2OH	2
C15:1 anteiso A	1.9
C16:0	1.8
C16:1ω5c	1.5
anteiso-C17:1B/iso-C17:1I	1.5
C17:0 2OH	1.1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	NAD metabolism	94.44	17 of 18
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	lipid metabolism	80.65	25 of 31
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	75	9 of 12
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	purine metabolism	74.47	70 of 94
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	glutamate and glutamine metabolism	71.43	20 of 28
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	pyrimidine metabolism	66.67	30 of 45
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	tryptophan metabolism	65.79	25 of 38
[Ref.: #66794]	photosynthesis	64.29	9 of 14
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	leucine metabolism	61.54	8 of 13
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	coenzyme M biosynthesis	60	6 of 10
[Ref.: #66794]	glycolysis	58.82	10 of 17
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	valine metabolism	55.56	5 of 9
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	lysine metabolism	52.38	22 of 42
[Ref.: #66794]	Entner Doudoroff pathway	50	5 of 10
[Ref.: #66794]	threonine metabolism	50	5 of 10
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	phenol degradation	50	10 of 20
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	starch degradation	50	5 of 10
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	arginine metabolism	50	12 of 24
[Ref.: #66794]	catecholamine biosynthesis	50	2 of 4
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	oxidative phosphorylation	40.66	37 of 91
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	elloramycin biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	ketogluconate metabolism	37.5	3 of 8
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	proline metabolism	36.36	4 of 11
[Ref.: #66794]	polyamine pathway	34.78	8 of 23
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	3-phenylpropionate degradation	33.33	5 of 15
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	carotenoid biosynthesis	22.73	5 of 22
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
[Ref.: #66794]	glutathione metabolism	21.43	3 of 14
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43100]	Sample type/isolated from	soil sample from a pine forest
[Ref.: #43100]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #43100]	Country	Republic of Korea
[Ref.: #43100]	Country ISO 3 Code	KOR
[Ref.: #43100]	Continent	Asia
[Ref.: #43100]	Geographic location	36.0000°/127.0000°
[Ref.: #43100]	Enrichment culture	tryptic soy agar (TSA; BD)
[Ref.: #43100]	Enrichment culture duration	7 days
[Ref.: #43100]	Enrichment culture temperature	30 ̊C
[Ref.: #43100]	Isolation date	serial dilut

[Ref.: #67770]	Sample type/isolated from	Pine forest soil inhabited by white heron in Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR078254 (>99% sequence identity) for Taibaiella soli subclade from Microbeatlas

Aquatic Samples	18
Soil Samples	148
Animal Samples	33
Plant Samples	76
Total Samples	275

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43100]	Taibaiella soli strain T1-10 16S ribosomal RNA gene, partial sequence	KR078254	1467	GenBank ENA	1649169 tax ID

[Ref.: #43100]	GC-content	42.5 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	42.5 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43100]

Culture collection no.

JCM 31014, KCTC 42277

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taibaiella helva sp. nov., isolated from farmland soil in China.	Chen LL, Hu T, Xing ZY, Lu JS, Yang H, Huang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003281	2019	*
Phylogeny	Taibaiella soli sp. nov., isolated from pine forest soil.	Kim MK, Kim TS, Joung Y, Han JH, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.001172	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43100

Min-Kyeong Kim, Tae-Su Kim, Yochan Joung, Ji-Hye Han, Seung Bum Kim: Taibaiella soli sp. nov., isolated from pine forest soil. IJSEM 66: 3230 - 3234 2016 ( DOI 10.1099/ijsem.0.001172 , PubMed 27222401 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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