Achromobacter agilis (LMG 3411, CCUG 62454)

Name: Achromobacter agilis (LMG 3411, CCUG 62454)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140509

Type strain

Culture col. no. LMG 3411 CCUG 62454

NCBI tax ID(s) 1353888

Special Collections CCUG Literature strains

Links

Achromobacter agilis LMG 3411 is an aerobe, mesophilic, Gram-negative prokaryote of the family Alcaligenaceae.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 817

LMG 3411,CCUG 2072,NCIB 9986,IAM 12559,NCIMB 9986,NCIM 2530,CCUG 62454

@ref 20215

Last LPSN update 2025-12-16 10:03:37

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter agilis

Full scientific name Achromobacter agilis (ex Bergey et al. 1925) Vandamme et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
43168	negative	0.9-1.5 µm	0.4-0.7 µm	rod-shaped
125439	negative
125438	negative

Colony morphology

@ref	Colony size	Colony color	Incubation period	Medium used
43168	1-1.5 mm	non-pigmented	2 days	tryptic soy agar (TSA)

Culture and growth conditions

Culture medium

@ref	Name	Growth
43168	tryptic soy agar (TSA)
43168	cetrimide agar
43168	Drigalsky agar
43168	blood agar

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43168	positive	growth	37	mesophilic
43168	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43168	aerobe
125438	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43168	NaCl	positive	growth	3 %
43168	NaCl		growth	4.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43168	16004 ChEBI	(R)-lactate	-	assimilation
43168	27856 ChEBI	acetamide	+	growth
43168	17128 ChEBI	adipate	+/-	assimilation
43168	16947 ChEBI	citrate	-	assimilation
43168	8391 ChEBI	D-gluconate	-	assimilation
43168	17634 ChEBI	D-glucose	-	assimilation
43168	16899 ChEBI	D-mannitol	-	assimilation
43168	16024 ChEBI	D-mannose	-	assimilation
43168	27689 ChEBI	decanoate	-	assimilation
43168	4853 ChEBI	esculin	-	hydrolysis
43168	5291 ChEBI	gelatin	-	hydrolysis
43168	17234 ChEBI	glucose	-	assimilation
43168	30849 ChEBI	L-arabinose	-	assimilation
43168	16467 ChEBI	L-arginine	-	assimilation
43168	15589 ChEBI	L-malate	-	assimilation
43168	17306 ChEBI	maltose	-	assimilation
43168	506227 ChEBI	N-acetylglucosamine	-	assimilation
43168	17632 ChEBI	nitrate	+	reduction
43168	16301 ChEBI	nitrite	+	reduction
43168	36405 ChEBI	norleucine	-	assimilation
43168	18401 ChEBI	phenylacetate	-	assimilation
43168	17992 ChEBI	sucrose	-	assimilation
43168	27082 ChEBI	trehalose	-	assimilation
43168	53426 ChEBI	tween 80	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43168	16136 ChEBI	hydrogen sulfide
43168	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43168	acid phosphatase	-	3.1.3.2
43168	alkaline phosphatase	-	3.1.3.1
43168	alpha-fucosidase	-	3.2.1.51
43168	alpha-galactosidase	-	3.2.1.22
43168	alpha-glucosidase	-	3.2.1.20
43168	alpha-mannosidase	-	3.2.1.24
43168	amylase	-
43168	arginine dihydrolase	-	3.5.3.6
43168	beta-galactosidase	-	3.2.1.23
43168	beta-glucosidase	-	3.2.1.21
43168	beta-glucuronidase	-	3.2.1.31
43168	catalase	+	1.11.1.6
43168	chymotrypsin	-	3.4.4.5
43168	cystine arylamidase	-	3.4.11.3
43168	cytochrome oxidase	+	1.9.3.1
43168	DNase	-
43168	esterase (C 4)	+
43168	esterase Lipase (C 8)	-
43168	leucine arylamidase	+	3.4.11.1
43168	lipase (C 14)	-
43168	lysine decarboxylase	-	4.1.1.18
43168	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43168	ornithine decarboxylase	-	4.1.1.17
43168	phosphoamidase	-	3.9.1.1
43168	trypsin	-	3.4.21.4
43168	tryptophanase	-	4.1.99.1
43168	urease	-	3.5.1.5
43168	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

43168

Fatty acid	Percentage
C15:0 iso 2OH / C16:1ω7c	37.61
C16:0	31.66
C18:1ω7c	9.6
C16:1 iso I / C14:0 3OH	7.85
C14:0	4.35
C12:0 2OH	2.42
C18:0	1.95
C17:0 cyclo	1.63
C12:0	1.37

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	LMG 3411T assembly for Achromobacter agilis LMG 3411	contig	GCA_900496965	1353888.3	2882181859	1353888	64.71

Genome browser: GCA_900496965

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43168	Achromobacter agilis partial 16S rRNA gene, strain LMG 3411	HG324050	1483		1353888

GC content

@ref	GC-content (mol%)	Method
43168	66.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter agilis LMG 3411
NCBI: GCA_900496965

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.90	no
125439	motility	BacteriaNetⓘ	yes	83.10	no
125439	gram_stain	BacteriaNetⓘ	negative	97.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter agilis strain LMG 3411
PATRIC: 1353888.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.93	yes
125438	anaerobic	anaerobicⓘ	no	96.85	no
125438	spore-forming	spore-formingⓘ	no	87.87	no
125438	aerobic	aerobicⓘ	yes	91.14	yes
125438	thermophilic	thermophileⓘ	no	97.49	yes
125438	flagellated	motile2+ⓘ	yes	84.16	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Achromobacter veterisilvae sp. nov., from a mixed hydrogen-oxidizing bacteria enrichment reactor for microbial protein production.	Dumolin C, Peeters C, Ehsani E, Tahon G, De Canck E, Cnockaert M, Boon N, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003786	2020
Phylogeny	Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov.	Vandamme PA, Peeters C, Inganas E, Cnockaert M, Houf K, Spilker T, Moore ERB, LiPuma JJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001254	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43168	Peter A. Vandamme, Charlotte Peeters, Elisabeth Inganäs, Margo Cnockaert, Kurt Houf, Theodore Spilker, Edward R. B. Moore, John J. LiPuma: Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov.. IJSEM 66: 3708 - 3717 2016 ( DOI 10.1099/ijsem.0.001254 , PubMed 27373279 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Achromobacter agilis (LMG 3411, CCUG 62454)

Name and taxonomic classification