Name: Achromobacter pestifer LMG 3431
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140508

Type strain:

Species: Achromobacter pestifer

Culture col. no.: LMG 3431, CCUG 61959, ATCC 15445

NCBI tax ID(s): 1353889 (species)

SI-ID 75

LMG 3431, ATCC 15445, CCUG 61959

Section

Achromobacter pestifer LMG 3431 is an aerobe, Gram-negative, motile bacterium that was isolated from oil-brine.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Achromobacter*
	Species	**Achromobacter pestifer**
	Full Scientific Name (LPSN)	Achromobacter pestifer (ex Frankland and Frankland 1887) Vandamme et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43168]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.171

[Ref.: #43168]	Cell length	0.9-1.5 µm

[Ref.: #43168]	Cell width	0.4-0.7 µm

[Ref.: #43168]	Cell shape	rod-shaped

[Ref.: #43168]	Motility	yes

[Ref.: #43168]	Colony size	1-1.5 mm
[Ref.: #43168]	Colony color	non-pigmented
[Ref.: #43168]	Incubation period	2 days
[Ref.: #43168]	Cultivation medium used	trypticase soy agar (TSA)

[Ref.: #62754]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

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Culture medium

trypticase soy agar (TSA)

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Culture medium growth

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Culture medium

Drigalsky agar

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Culture medium growth

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Culture medium

blood agar

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Culture medium growth

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Culture medium

cetrimide agar

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Culture medium growth

		Temperature
[Ref.: #43168]	growth	37 °C
[Ref.: #43168]	growth	30 °C
[Ref.: #62754]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43168]	Oxygen tolerance	aerobe
[Ref.: #62754]	Oxygen tolerance	aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %94.624

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43168]		NaCl		growth	3	%
[Ref.: #43168]		NaCl		growth	4.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43168]	(R)-lactate ChEBI	+	assimilation
[Ref.: #43168]	acetamide ChEBI	+	growth
[Ref.: #43168]	adipate ChEBI	+	assimilation
[Ref.: #43168]	citrate ChEBI	+	assimilation
[Ref.: #43168]	D-gluconate ChEBI	+	assimilation
[Ref.: #43168]	D-glucose ChEBI	-	assimilation
[Ref.: #43168]	D-mannitol ChEBI	-	assimilation
[Ref.: #43168]	D-mannose ChEBI	+	assimilation
[Ref.: #43168]	decanoate ChEBI	+/-	assimilation
[Ref.: #43168]	esculin ChEBI	-	hydrolysis
[Ref.: #43168]	gelatin ChEBI	-	hydrolysis
[Ref.: #43168]	glucose ChEBI	-	assimilation
[Ref.: #43168]	L-arabinose ChEBI	+	assimilation
[Ref.: #43168]	L-arginine ChEBI	-	assimilation
[Ref.: #43168]	L-malate ChEBI	+	assimilation
[Ref.: #43168]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43168]	nitrate ChEBI	+	reduction
[Ref.: #43168]	nitrite ChEBI	-	reduction
[Ref.: #43168]	norleucine ChEBI	-	assimilation
[Ref.: #43168]	phenylacetate ChEBI	+	assimilation
[Ref.: #43168]	sucrose ChEBI	-	assimilation
[Ref.: #43168]	trehalose ChEBI	-	assimilation
[Ref.: #43168]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43168]		hydrogen sulfide ChEBI	no
[Ref.: #43168]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43168]	acid phosphatase	+	3.1.3.2
[Ref.: #43168]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43168]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43168]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43168]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43168]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43168]	amylase	-
[Ref.: #43168]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43168]	beta-galactosidase	-	3.2.1.23
[Ref.: #43168]	beta-glucosidase	-	3.2.1.21
[Ref.: #43168]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43168]	catalase	+	1.11.1.6
[Ref.: #43168]	chymotrypsin	-	3.4.4.5
[Ref.: #43168]	cystine arylamidase	-	3.4.11.3
[Ref.: #43168]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43168]	DNase	-
[Ref.: #43168]	esterase (C 4)	+
[Ref.: #43168]	esterase Lipase (C 8)	-
[Ref.: #43168]	leucine arylamidase	+	3.4.11.1
[Ref.: #43168]	lipase (C 14)	-
[Ref.: #43168]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43168]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43168]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43168]	phosphoamidase	-	3.9.1.1
[Ref.: #43168]	trypsin	-	3.4.21.4
[Ref.: #43168]	tryptophanase	-	4.1.99.1
[Ref.: #43168]	urease	-	3.5.1.5
[Ref.: #43168]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43168]

Fatty acid	Percentage
C15:0 iso 2OH / C16:1ω7c	34.87
C16:0	34.68
C16:1 iso I / C14:0 3OH	8.98
C18:1ω7c	5.93
C17:0 cyclo	5.11
C14:0	3.56
C12:0 2OH	3.26
C12:0	1.81
C18:0	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43168]	Sample type/isolated from	oil-brine

[Ref.: #62754]	Sample type/isolated from	Oil brine
[Ref.: #62754]	Country	Japan
[Ref.: #62754]	Country ISO 3 Code	JPN
[Ref.: #62754]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HG324051 (>99% sequence identity) for Achromobacter from Microbeatlas

Aquatic Samples	1212
Soil Samples	1429
Animal Samples	2896
Plant Samples	1751
Total Samples	7288

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43168]	Achromobacter pestifer partial 16S rRNA gene, strain LMG 3431	HG324051	1483	GenBank ENA	1353889 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Achromobacter pestifer LMG 3431	GCA_902859625	contig	GenBank ENA	1353889 tax ID	*
[Ref.: #66792]	Achromobacter pestifer strain LMG 3431	1353889.3	wgs	PATRIC	1353889 tax ID	*
[Ref.: #66792]	Achromobacter pestifer LMG 3431	2921347846	draft	JGI IMG/M	1353889 tax ID	*

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GC-content

63.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Achromobacter pestifer strain LMG 3431 PATRIC: 1353889.3
[Ref.: #69480]	motile	yes	88.034	yes
[Ref.: #69480]	gram-positive	no	98.171	no
[Ref.: #69480]	anaerobic	no	99.07	yes
[Ref.: #69480]	halophile	no	90.114	no
[Ref.: #69480]	spore-forming	no	94.624	no
[Ref.: #69480]	thermophile	no	99.563	no
[Ref.: #69480]	glucose-util	no	62.94	yes
[Ref.: #69480]	flagellated	no	54.865	no
[Ref.: #69480]	aerobic	yes	91.705	no
[Ref.: #69480]	glucose-ferment	no	90.593	no

Availability in culture collections External links

[Ref.: #43168]

Culture collection no.

LMG 3431, CCUG 61959, ATCC 15445

[Ref.: #96735]

SI-ID 75

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov.	Vandamme PA, Peeters C, Inganas E, Cnockaert M, Houf K, Spilker T, Moore ERB, LiPuma JJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001254	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43168

Peter A. Vandamme, Charlotte Peeters, Elisabeth Inganäs, Margo Cnockaert, Kurt Houf, Theodore Spilker, Edward R. B. Moore, John J. LiPuma: Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov.. IJSEM 66: 3708 - 3717 2016 ( DOI 10.1099/ijsem.0.001254 , PubMed 27373279 )

#62754 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61959

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96735

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID75.1 )

* These data were automatically processed and therefore are not curated

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Achromobacter pestifer strain LMG 3431

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