Name: Zeaxanthinibacter aestuarii S2-22
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140499

Type strain:

Species: Zeaxanthinibacter aestuarii

Strain Designation: S2-22

Culture col. no.: KACC 18503, JCM 31155

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; S2-22.

NCBI tax ID(s): 1796906 (species)

Special Collections

Section

Zeaxanthinibacter aestuarii S2-22 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and has a orange-yellow pigmentation.

colony-forming
Gram-negative
pigmented
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Zeaxanthinibacter*
	Species	**Zeaxanthinibacter aestuarii**
	Full Scientific Name (LPSN)	Zeaxanthinibacter aestuarii Lee et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43117]	Gram stain	negative

[Ref.: #43117]	Cell length	2.5-6.0 µm

[Ref.: #43117]	Cell width	0.3-0.7 µm

[Ref.: #43117]	Cell shape	rod-shaped

[Ref.: #43117]	Motility	no

[Ref.: #43117]	Colony color	yellow
[Ref.: #43117]	Colony shape	circular
[Ref.: #43117]	Cultivation medium used	marine agar (MA)

[Ref.: #43117]	Pigment production	yes
[Ref.: #43117]	Pigmentation color	orange-yellow
[Ref.: #43117]	Pigment name	zeaxanthin (Carotenoid)

Information on culture and growth conditions Culture and growth conditions

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Culture medium

marine agar (MA)

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Culture medium growth

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Culture medium

nutritient agar (NA)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

tryptic soy agar (TSA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

		Temperature
[Ref.: #43117]	optimum	35-37 °C
[Ref.: #43117]	growth	15-43 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43117]			optimum	6.5-7.5
[Ref.: #43117]			growth	5.5-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43117]		NaCl		growth	0-10	%(w/v)
[Ref.: #43117]		NaCl		optimum	2	%(w/v)

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Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43117]	2,3-butanediol ChEBI	+	oxidation
[Ref.: #43117]	2-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #43117]	2-oxobutanoate ChEBI	-	oxidation
[Ref.: #43117]	2-oxoglutarate ChEBI	+	oxidation
[Ref.: #43117]	2-oxopentanoate ChEBI	+	oxidation
[Ref.: #43117]	3-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #43117]	4-hydroxy-L-proline ChEBI	-	oxidation
[Ref.: #43117]	4-hydroxybutyrate ChEBI	-	oxidation
[Ref.: #43117]	4-hydroxyphenylacetic acid ChEBI	-	oxidation
[Ref.: #43117]	acetate ChEBI	+	oxidation
[Ref.: #43117]	adipate ChEBI	-	assimilation
[Ref.: #43117]	alpha-cyclodextrin ChEBI	+	oxidation
[Ref.: #43117]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #43117]	alpha-lactose ChEBI	-	oxidation
[Ref.: #43117]	bromosuccinate ChEBI	+	oxidation
[Ref.: #43117]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43117]	casein	-	hydrolysis
[Ref.: #43117]	cellobiose ChEBI	+	oxidation
[Ref.: #43117]	chitin ChEBI	-	hydrolysis
[Ref.: #43117]	cis-aconitate ChEBI	+	oxidation
[Ref.: #43117]	citrate ChEBI	+	oxidation
[Ref.: #43117]	D-alanine ChEBI	-	oxidation
[Ref.: #43117]	D-arabitol ChEBI	+	oxidation
[Ref.: #43117]	D-fructose ChEBI	+	oxidation
[Ref.: #43117]	D-galactonic acid lactone ChEBI	-	oxidation
[Ref.: #43117]	D-galactose ChEBI	+	oxidation
[Ref.: #43117]	D-galacturonic acid ChEBI	-	oxidation
[Ref.: #43117]	D-gluconate ChEBI	-	oxidation
[Ref.: #43117]	D-glucosaminic acid ChEBI	-	oxidation
[Ref.: #43117]	D-glucose ChEBI	+	assimilation
[Ref.: #43117]	D-glucose 6-phosphate ChEBI	-	oxidation
[Ref.: #43117]	D-glucuronate ChEBI	+	oxidation
[Ref.: #43117]	D-mannitol ChEBI	+	assimilation
[Ref.: #43117]	D-mannitol ChEBI	+	oxidation
[Ref.: #43117]	D-mannose ChEBI	+	assimilation
[Ref.: #43117]	D-mannose ChEBI	+	oxidation
[Ref.: #43117]	D-psicose ChEBI	+	oxidation
[Ref.: #43117]	D-saccharate ChEBI	-	oxidation
[Ref.: #43117]	D-serine ChEBI	-	oxidation
[Ref.: #43117]	D-sorbitol ChEBI	+	oxidation
[Ref.: #43117]	D-trehalose ChEBI	+	oxidation
[Ref.: #43117]	decanoate ChEBI	-	assimilation
[Ref.: #43117]	dextrin ChEBI	-	oxidation
[Ref.: #43117]	DL-carnitine ChEBI	+	oxidation
[Ref.: #43117]	erythritol ChEBI	+	oxidation
[Ref.: #43117]	esculin ChEBI	+	hydrolysis
[Ref.: #43117]	ethanolamine ChEBI	-	oxidation
[Ref.: #43117]	formate ChEBI	-	oxidation
[Ref.: #43117]	gamma-aminobutyric acid ChEBI	-	oxidation
[Ref.: #43117]	gelatin ChEBI	-	hydrolysis
[Ref.: #43117]	gentiobiose ChEBI	+	oxidation
[Ref.: #43117]	glucose 1-phosphate ChEBI	+	oxidation
[Ref.: #43117]	glucuronamide ChEBI	-	oxidation
[Ref.: #43117]	glycerol ChEBI	+	oxidation
[Ref.: #43117]	glycerol 1-phosphate ChEBI	+	oxidation
[Ref.: #43117]	glycogen ChEBI	-	oxidation
[Ref.: #43117]	glycyl L-aspartic acid ChEBI	+	oxidation
[Ref.: #43117]	glycyl-l-glutamate ChEBI	-	oxidation
[Ref.: #43117]	inosine ChEBI	-	oxidation
[Ref.: #43117]	itaconate ChEBI	-	oxidation
[Ref.: #43117]	L-alaninamide ChEBI	+	oxidation
[Ref.: #43117]	L-alanine ChEBI	-	oxidation
[Ref.: #43117]	L-alanylglycine ChEBI	-	oxidation
[Ref.: #43117]	L-arabinose ChEBI	+	assimilation
[Ref.: #43117]	L-arabinose ChEBI	+	oxidation
[Ref.: #43117]	L-asparagine ChEBI	+	oxidation
[Ref.: #43117]	L-aspartate ChEBI	+	oxidation
[Ref.: #43117]	L-fructose ChEBI	+	oxidation
[Ref.: #43117]	L-glutamate ChEBI	+	oxidation
[Ref.: #43117]	L-histidine ChEBI	+	oxidation
[Ref.: #43117]	L-leucine ChEBI	+	oxidation
[Ref.: #43117]	L-ornithine ChEBI	+	oxidation
[Ref.: #43117]	L-phenylalanine ChEBI	+	oxidation
[Ref.: #43117]	L-proline ChEBI	+	oxidation
[Ref.: #43117]	L-pyroglutamic acid ChEBI	-	oxidation
[Ref.: #43117]	L-rhamnose ChEBI	+	oxidation
[Ref.: #43117]	L-serine ChEBI	-	oxidation
[Ref.: #43117]	L-threonine ChEBI	+	oxidation
[Ref.: #43117]	lactate ChEBI	+	oxidation
[Ref.: #43117]	lactulose ChEBI	+	oxidation
[Ref.: #43117]	malate ChEBI	+	assimilation
[Ref.: #43117]	malonate ChEBI	+	oxidation
[Ref.: #43117]	maltose ChEBI	+	assimilation
[Ref.: #43117]	maltose ChEBI	+	oxidation
[Ref.: #43117]	melibiose ChEBI	-	oxidation
[Ref.: #43117]	methyl beta-D-glucopyranoside ChEBI	+	oxidation
[Ref.: #43117]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #43117]	monomethyl succinate ChEBI	-	oxidation
[Ref.: #43117]	myo-inositol ChEBI	-	oxidation
[Ref.: #43117]	N-acetylgalactosamine ChEBI	-	oxidation
[Ref.: #43117]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43117]	N-acetylglucosamine ChEBI	+	oxidation
[Ref.: #43117]	nitrate ChEBI	+	reduction
[Ref.: #43117]	phenylacetate ChEBI	-	assimilation
[Ref.: #43117]	phenylethylamine ChEBI	+	oxidation
[Ref.: #43117]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43117]	propionate ChEBI	-	oxidation
[Ref.: #43117]	putrescine ChEBI	+	oxidation
[Ref.: #43117]	quinate ChEBI	-	oxidation
[Ref.: #43117]	raffinose ChEBI	+	oxidation
[Ref.: #43117]	ribitol ChEBI	-	oxidation
[Ref.: #43117]	sebacic acid ChEBI	-	oxidation
[Ref.: #43117]	sodium citrate ChEBI	+	assimilation
[Ref.: #43117]	starch ChEBI	-	hydrolysis
[Ref.: #43117]	succinamate ChEBI	-	oxidation
[Ref.: #43117]	sucrose ChEBI	-	oxidation
[Ref.: #43117]	thymidine ChEBI	+	oxidation
[Ref.: #43117]	turanose ChEBI	+	oxidation
[Ref.: #43117]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43117]	tween 40 ChEBI	-	oxidation
[Ref.: #43117]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43117]	tween 80 ChEBI	+	oxidation
[Ref.: #43117]	tyrosine ChEBI	+	hydrolysis
[Ref.: #43117]	uridine ChEBI	-	oxidation
[Ref.: #43117]	urocanic acid ChEBI	-	oxidation
[Ref.: #43117]	xylitol ChEBI	+	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43117]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43117]	acid phosphatase	+	3.1.3.2
[Ref.: #43117]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43117]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43117]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43117]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43117]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43117]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43117]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43117]	beta-galactosidase	+	3.2.1.23
[Ref.: #43117]	beta-glucosidase	+	3.2.1.21
[Ref.: #43117]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43117]	catalase	+	1.11.1.6
[Ref.: #43117]	cystine arylamidase	+	3.4.11.3
[Ref.: #43117]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43117]	esterase (C 4)	+
[Ref.: #43117]	esterase Lipase (C 8)	+
[Ref.: #43117]	leucine arylamidase	+	3.4.11.1
[Ref.: #43117]	lipase (C 14)	-
[Ref.: #43117]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43117]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43117]	trypsin	+	3.4.21.4
[Ref.: #43117]	urease	-	3.5.1.5
[Ref.: #43117]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43117]

Fatty acid	Percentage
C15:0 iso	33.7
C17:0 iso 3OH	17.1
C16:1ω7c / C16:1ω6c	14
C15:1 iso G	13.1
C15:0 iso 3OH	6.5
C17:1 iso ω9c / C16:0 10-methyl	4
C15:1ω6c	2.5
C16:0	1.5
iso-C17:1 I/anteiso-C17:1 B	1.4
C17:1ω6c	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43117]	Sample type/isolated from	estuary sediment sample
[Ref.: #43117]	Geographic location (country and/or sea, region)	Asan
[Ref.: #43117]	Country	Republic of Korea
[Ref.: #43117]	Country ISO 3 Code	KOR
[Ref.: #43117]	Continent	Asia
[Ref.: #43117]	Geographic location	36.0000°/126.0000°
[Ref.: #43117]	Enrichment culture	marine agar 2216 (MA; BD)
[Ref.: #43117]	Enrichment culture duration	5 days
[Ref.: #43117]	Enrichment culture temperature	30 ̊C
[Ref.: #43117]	Isolation/enrichment procedure	serial dilution plating method

[Ref.: #67770]	Sample type/isolated from	Estuary sediment
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU667250 (>99% sequence identity) for Zeaxanthinibacter aestuarii subclade from Microbeatlas

Aquatic Samples	91
Soil Samples	53
Animal Samples
Plant Samples
Total Samples	144

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43117]	Zeaxanthinibacter aestuarii strain S2-22 16S ribosomal RNA gene, partial sequence	KU667250	1448	GenBank ENA	1796906 tax ID

[Ref.: #43117]	GC-content	45.5 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	45.5 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43117]

Culture collection no.

KACC 18503, JCM 31155

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zeaxanthinibacter aestuarii sp. nov., isolated from estuary sediment and emended description of the genus Zeaxanthinibacter Asker et al. 2007.	Lee Y, Jeong HI, Jeong SE, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.001185	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43117

Yunhee Lee, Hye Im Jeong, Sang Eun Jeong, Che Ok Jeon: Zeaxanthinibacter aestuarii sp. nov., isolated from estuary sediment and emended description of the genus Zeaxanthinibacter Asker et al. 2007. IJSEM 66: 3264 - 3269 2016 ( DOI 10.1099/ijsem.0.001185 , PubMed 27220982 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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