Name: Streptomyces verrucosisporus CPB1-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140496

Type strain:

Species: Streptomyces verrucosisporus

Strain Designation: CPB1-1

Culture col. no.: JCM 18519, PCU 343, TISTR 2344, DSM 111120

Strain history: S. Tanasupawat; Chulalongkorn Univ., Thailand; CPB1-1.

NCBI tax ID(s): 1695161 (species)

SI-ID 402481

DSM 111120

Special Collections

Other strains from Streptomyces verrucosisporus

Section

When using BacDive for research please cite our paper

Streptomyces verrucosisporus CPB1-1 is an aerobe, spore-forming, Gram-positive bacterium that builds a substrate mycelium and was isolated from near-shore marine sediment samples.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces verrucosisporus**
	Full Scientific Name (LPSN)	Streptomyces verrucosisporus Phongsopitanun et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43110]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %99.9

[Ref.: #43110]	Motility	no
[Ref.: #125439]	Motility	no Confidence in %91.5

[Ref.: #43110]	Multicellular complex forming ability	yes
[Ref.: #43110]	Multicellular complex name	substrate mycelium
[Ref.: #43110]	Medium Name (multicellularity)	ISP 2/4/5/6/7
[Ref.: #43110]	Multicellular complex further description	extensively branched

[Ref.: #43110]	Multicellular complex forming ability	yes
[Ref.: #43110]	Multicellular complex name	aerial mycelium
[Ref.: #43110]	Multicellular complex color	white to greenish-grey
[Ref.: #43110]	Medium Name (multicellularity)	ISP and marine media
[Ref.: #43110]	Multicellular complex further description	extensively branched

[Ref.: #43110]	Multicellular complex forming ability	yes
[Ref.: #43110]	Multicellular complex name	spore chain
[Ref.: #43110]	Medium Name (multicellularity)	agar medium
[Ref.: #43110]	Multicellular complex further description	open-looped spiral spore chain (retinaculum-apertum type) with ellipsoid to ovule spores

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 4

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Culture medium

ISP 5

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Culture medium

ISP 6

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Culture medium

ISP 7

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Culture medium

Marine agar (MA)

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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	Kind of temperature		Temperature
[Ref.: #43110]	negative	growth	50 °C
[Ref.: #43110]	negative	growth	15 °C
[Ref.: #43110]		optimum	30-37 °C
[Ref.: #43110]		growth	20-45 °C
[Ref.: #66463]		growth	28 °C
[Ref.: #67770]		growth	28 °C

	pH	Kind of pH		pH
[Ref.: #43110]			optimum	8.0-9.0
[Ref.: #43110]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43110]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99.1

[Ref.: #43110]	Spore description	ellipsoid to ovule spores of 0.7-1.0x0.8-1.3 µm
[Ref.: #43110]	Ability of spore formation	yes
[Ref.: #125439]	Ability of spore formation	yes Confidence in %94.9
[Ref.: #125438]	Ability of spore formation	yes Confidence in %91.426

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43110]		NaCl		maximum	6	%(w/v)

[Ref.: #43110]	Observation	seawater required for growth
[Ref.: #67770]	Observation	quinones: MK-9(H₆), MK-9(H₈), MK-10(H₆), MK-10(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43110]	cellobiose ChEBI	+	carbon source
[Ref.: #43110]	cellulose ChEBI	-	carbon source
[Ref.: #43110]	D-fructose ChEBI	-	carbon source
[Ref.: #43110]	D-glucose ChEBI	+	carbon source
[Ref.: #43110]	D-mannitol ChEBI	-	carbon source
[Ref.: #43110]	D-mannose ChEBI	+/-	carbon source
[Ref.: #43110]	D-ribose ChEBI	-	carbon source
[Ref.: #43110]	D-xylose ChEBI	+/-	carbon source
[Ref.: #43110]	esculin ChEBI	+	hydrolysis
[Ref.: #43110]	gelatin ChEBI	+	hydrolysis
[Ref.: #43110]	L-arabinose ChEBI	+/-	carbon source
[Ref.: #43110]	myo-inositol ChEBI	-	carbon source
[Ref.: #43110]	nitrate ChEBI	+	reduction
[Ref.: #43110]	raffinose ChEBI	-	carbon source
[Ref.: #43110]	salicin ChEBI	-	carbon source
[Ref.: #43110]	starch ChEBI	+	hydrolysis
[Ref.: #43110]	sucrose ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43110]	acid phosphatase	+/-	3.1.3.2
[Ref.: #43110]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43110]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43110]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43110]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #43110]	alpha-glucosidase	+/-	3.2.1.20
[Ref.: #43110]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43110]	beta-galactosidase	-	3.2.1.23
[Ref.: #43110]	beta-glucosidase	+	3.2.1.21
[Ref.: #43110]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43110]	cystine arylamidase	-	3.4.11.3
[Ref.: #43110]	esterase (C 4)	+
[Ref.: #43110]	esterase Lipase (C 8)	+
[Ref.: #43110]	leucine arylamidase	+	3.4.11.1
[Ref.: #43110]	lipase (C 14)	+/-
[Ref.: #43110]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43110]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43110]	trypsin	-	3.4.21.4
[Ref.: #43110]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43110]

Fatty acid	Percentage
C15:0 anteiso	37.3
C17:0 anteiso	20.8
C16:0 iso	18.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43110]	Sample type/isolated from	near-shore marine sediment samples
[Ref.: #43110]	Geographic location (country and/or sea, region)	Chumphon beach, Chumpon Province
[Ref.: #43110]	Country	Thailand
[Ref.: #43110]	Country ISO 3 Code	THA
[Ref.: #43110]	Continent	Asia
[Ref.: #43110]	Geographic location	10.0000°/99.0000°

[Ref.: #66463]	Sample type/isolated from	marine sediments
[Ref.: #66463]	Geographic location (country and/or sea, region)	Chumphon Province, Thailand
[Ref.: #66463]	Country	Thailand
[Ref.: #66463]	Country ISO 3 Code	THA
[Ref.: #66463]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Marine sediments from Chumphon Province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

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Global distribution of 16S sequence LC069041 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	6
Soil Samples	117
Animal Samples	1
Plant Samples	6
Total Samples	130

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43110]	Streptomyces verrucosisporus gene for 16S ribosomal RNA, partial sequence, strain: CPB1-1	LC069041	1403	GenBank ENA	1695161 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces verrucosisporus CPB1-1	GCA_017114865	contig	GenBank ENA	1695161 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces verrucosisporus CPB1-1 NCBI: GCA_017114865.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	88.796	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.79	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	87.213	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	91.426	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.099	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	89.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces verrucosisporus CPB1-1 NCBI: GCA_017114865
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	94.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	91.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.1

Availability in culture collections External links

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Culture collection no.

JCM 18519, PCU 343, TISTR 2344, DSM 111120

[Ref.: #96733]

SI-ID 402481

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces verrucosisporus sp. nov., isolated from marine sediments.	Phongsopitanun W, Kudo T, Ohkuma M, Pittayakhajonwut P, Suwanborirux K, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001240	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43110

Wongsakorn Phongsopitanun, Takuji Kudo, Moriya Ohkuma, Pattama Pittayakhajonwut, Khanit Suwanborirux, Somboon Tanasupawat: Streptomyces verrucosisporus sp. nov., isolated from marine sediments. IJSEM 66: 3607 - 3613 2016 ( DOI 10.1099/ijsem.0.001240 , PubMed 27306744 )

#66463

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111120

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96733

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402481.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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