Actinomadura montaniterrae (JCM 16995, KCTC 39784, PCU 349)

Name: Actinomadura montaniterrae (JCM 16995, KCTC 39784, PCU 349)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140490

Type strain

Strain Designation CYP1-1B

Culture col. no. JCM 16995 KCTC 39784 PCU 349 TISTR 2400 CYP1-1B

NCBI tax ID(s) 1803903

Special Collections JCM KCTC Literature strains

History JCM <-- S. Tanasupawat; Chulalongkorn Univ., Thailand; CYP1-1B. KCTC <- Somboon Tanasupawat

Links

Actinomadura montaniterrae CYP1-1B is an aerobe, spore-forming, Gram-positive bacterium that builds a substrate mycelium and was isolated from mountain soil sample.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 273085

LMG 29872,KCTC 39784,JCM 16995

@ref 20215

Last LPSN update 2026-05-29 08:39:43

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura montaniterrae

Full scientific name Actinomadura montaniterrae Songsumanus et al. 2016

Morphology

Cell morphology

@ref	Confidence	Gram stain
43102		positive
125439	93.79
125439	99.786	positive

Colony morphology

@ref	Colony color	Medium used
43102	dark greyish yellow	ISP 2

Multicellular morphology

@ref	Forms multicellular complex	Complex name	Complex color	Medium name	Further description
43102		substrate mycelium	dark greyish yellow	ISP2	extensively branched non-fragmenting substrate mycelium
43102		aerial mycelium	pale green	ISP2

Culture and growth conditions

Culture medium

@ref	Name	Growth
43102	ISP 7
43102	nutritient agar (NA)
43102	ISP 2

Culture temp

@ref	Growth	Type	Temperature (°C)
43102	positive	growth	20-45
67770	positive	growth	28
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH
43102	positive	growth	4.5-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43102	aerobe
67771	aerobe
125439	obligate aerobe	99.622

Spore formation

@ref	Spore description	Spore formation	Confidence
43102	oval to ellipsoid spores formed along the sporogenous hyphae and its branches
125439			96.308

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43102	NaCl	positive	maximum	5 %(w/v)

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43102	17057 ChEBI	cellobiose	+	carbon source
43102	15824 ChEBI	D-fructose	+	carbon source
43102	12936 ChEBI	D-galactose	-	carbon source
43102	17634 ChEBI	D-glucose	+	carbon source
43102	16899 ChEBI	D-mannitol	+	carbon source
43102	16988 ChEBI	D-ribose	-	carbon source
43102	65327 ChEBI	D-xylose	+	carbon source
43102	5291 ChEBI	gelatin	-	hydrolysis
43102	17754 ChEBI	glycerol	-	carbon source
43102	30849 ChEBI	L-arabinose	+	carbon source
43102	62345 ChEBI	L-rhamnose	+	carbon source
43102	17716 ChEBI	lactose	+	carbon source
43102	28053 ChEBI	melibiose	-	carbon source
43102		milk	-	hydrolysis
43102	17632 ChEBI	nitrate	-	reduction
43102	16634 ChEBI	raffinose	-	carbon source
43102	17814 ChEBI	salicin	-	carbon source
43102	28017 ChEBI	starch	+	hydrolysis
43102	17992 ChEBI	sucrose	+	carbon source

Fatty acid profile

Metadata FA analysis

@ref

43102

Fatty acid	Percentage
C16:0	31.2
C18:0 10-methyl	19
C18:1ω9c	17.1
C16:0 2OH	10.5
C16:1ω7c	5.4
C14:0	4.6
C18:0	3.3
C16:0 10-methyl	1.9
C17:0	0.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
43102	mountain soil sample	Chaiyaphum Province	Thailand	THA	Asia	starch casein nitrate agar	supplemented with nystatin (50 mg/l) and nalidixic acid (20 mg/l)	21 days	30
67770	Mountain soil		Thailand	THA	Asia
67771	From Mountain soil		Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC126428 (>99% sequence identity) for Actinomadura from Microbeatlas

Aquatic Samples	10
Soil Samples	69
Animal Samples	7
Plant Samples	7
Total Samples	93

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM892336v1 assembly for Actinomadura montaniterrae CYP1-1B	scaffold	GCA_008923365	1803903.3	2898631135	1803903	0

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
43102	Actinomadura montaniterrae CYP1-1B gene for 16S rRNA, partial sequence	LC126428	1488	1803903
124043	Actinomadura montaniterrae strain PCU 349 16S ribosomal RNA gene, partial sequence.	MT758160	1345	1803903
124043	Actinomadura montaniterrae strain PCU 349 16S ribosomal RNA gene, partial sequence.	MT760034	1343	1803903

GC content

@ref	GC-content (mol%)	Method
43102	74.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM892336v1 assembly for Actinomadura montaniterrae CYP1-1B
NCBI: GCA_008923365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.62	no
125439	gram_stain	BacteriaNetⓘ	positive	99.79	no
125439	spore_formation	BacteriaNetⓘ	yes	96.31	no
125439	motility	BacteriaNetⓘ	no	93.79	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinomadura montaniterrae CYP1-1B
NCBI: GCA_008923365.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.37	no
125438	anaerobic	anaerobicⓘ	no	95.14	no
125438	aerobic	aerobicⓘ	yes	89.81	yes
125438	spore-forming	spore-formingⓘ	yes	87.24	yes
125438	thermophilic	thermophileⓘ	no	95.91	no
125438	flagellated	motile2+ⓘ	no	87.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Diversity of Actinobacteria Isolated from Date Palms Rhizosphere and Saline Environments: Isolation, Identification and Biological Activity Evaluation.	Messaoudi O, Wink J, Bendahou M.	Microorganisms	10.3390/microorganisms8121853	2020
Phylogeny	Actinomadura violacea sp. nov., a madurastatin A1-producing strain isolated from lichen in Thailand.	Kanchanasin P, Phongsopitanun W, Yuki M, Kudo T, Ohkuma M, Nakashima T, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.005126	2021
Phylogeny	Actinomadura physcomitrii sp. nov., a novel actinomycete isolated from moss [Physcomitrium sphaericum (Ludw) Fuernr].	Zhuang X, Peng C, Wang Z, Zhao J, Shen Y, Liu C, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-019-01380-7	2020
Phylogeny	Actinomadura montaniterrae sp. nov., isolated from mountain soil.	Songsumanus A, Kudo T, Ohkuma M, Phongsopitanun W, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001196	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43102	Apakorn Songsumanus, Takuji Kudo, Moriya Ohkuma, Wongsakorn Phongsopitanun, Somboon Tanasupawat: Actinomadura montaniterrae sp. nov., isolated from mountain soil. IJSEM 66: 3310 - 3316 2016 ( DOI 10.1099/ijsem.0.001196 , PubMed 27255441 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomadura montaniterrae (JCM 16995, KCTC 39784, PCU 349)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_008923365

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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