Name: Kocuria pelophila RS-2-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140489

Type strain:

Species: Kocuria pelophila

Strain Designation: RS-2-3

Culture col. no.: NBRC 110990, InaCC A704

NCBI tax ID(s): 1638993 (species)

Section

Kocuria pelophila RS-2-3 is an aerobe, psychrophilic, Gram-positive bacterium that forms circular colonies and was isolated from rhizosphere of a mangrove.

coccus-shaped
colony-forming
Gram-positive
aerobe
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Kocuria*
	Species	**Kocuria pelophila**
	Full Scientific Name (LPSN)	Kocuria pelophila Hamada et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43101]	Gram stain	positive

[Ref.: #43101]	Cell length	1 µm

[Ref.: #43101]	Cell width	1 µm

[Ref.: #43101]	Cell shape	coccus-shaped

[Ref.: #43101]	Motility	no

[Ref.: #43101]	Colony size	0.5-1 mm
[Ref.: #43101]	Colony color	orange-yellow
[Ref.: #43101]	Colony shape	circular
[Ref.: #43101]	Incubation period	2 days
[Ref.: #43101]	Cultivation medium used	NBRC medium 802

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43101]

Culture medium

NBRC medium 802

[Ref.: #43101]

Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #43101]	optimum	7 °C
[Ref.: #43101]	growth	6-9 °C
[Ref.: #43101]	optimum	28 °C
[Ref.: #43101]	growth	15-37 °C

[Ref.: #43101]	Temperature range	psychrophilic
[Ref.: #43101]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43101]		NaCl		growth	0-15	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43101]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43101]	D-ribose ChEBI	-	builds acid from
[Ref.: #43101]	D-xylose ChEBI	+	builds acid from
[Ref.: #43101]	esculin ChEBI	-	hydrolysis
[Ref.: #43101]	gelatin ChEBI	+	hydrolysis
[Ref.: #43101]	glucose ChEBI	+	builds acid from
[Ref.: #43101]	glycogen ChEBI	+	builds acid from
[Ref.: #43101]	lactose ChEBI	-	builds acid from
[Ref.: #43101]	maltose ChEBI	-	builds acid from
[Ref.: #43101]	nitrate ChEBI	+	reduction
[Ref.: #43101]	sucrose ChEBI	-	builds acid from
[Ref.: #43101]	urea ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43101]	acid phosphatase	+	3.1.3.2
[Ref.: #43101]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43101]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43101]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43101]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43101]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43101]	beta-galactosidase	-	3.2.1.23
[Ref.: #43101]	beta-glucosidase	-	3.2.1.21
[Ref.: #43101]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43101]	catalase	+	1.11.1.6
[Ref.: #43101]	chymotrypsin	-	3.4.4.5
[Ref.: #43101]	cystine arylamidase	-	3.4.11.3
[Ref.: #43101]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43101]	esterase (C 4)	+
[Ref.: #43101]	esterase Lipase (C 8)	+
[Ref.: #43101]	leucine arylamidase	+	3.4.11.1
[Ref.: #43101]	lipase (C 14)	-
[Ref.: #43101]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43101]	phosphohydrolase	+
[Ref.: #43101]	pyrazinamidase	+	3.5.1.B15
[Ref.: #43101]	pyrrolidonyl arylamidase	+	3.4.19.3
[Ref.: #43101]	trypsin	+	3.4.21.4
[Ref.: #43101]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43101]

Fatty acid	Percentage
C15:0 anteiso	71.4
C15:0 iso	14.2
C17:0 anteiso	4
C18:3ω6c	3.3
C16:0 iso	2.2
C16:0	2
C17:0 iso	1.2
C14:0 iso	1.1
C12:0 anteiso	0.8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43101]	Sample type/isolated from	rhizosphere of a mangrove
[Ref.: #43101]	Geographic location (country and/or sea, region)	Rambut Island, DKI Jakarta
[Ref.: #43101]	Country	Indonesia
[Ref.: #43101]	Country ISO 3 Code	IDN
[Ref.: #43101]	Continent	Asia
[Ref.: #43101]	Geographic location	-6.0000°/106.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43101]	Kocuria sp. RS-2-3 gene for 16S ribosomal RNA, partial sequence	LC042214	1490	GenBank	1638993 tax ID

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GC-content

71.8 mol%

Availability in culture collections External links

[Ref.: #43101]

Culture collection no.

NBRC 110990, InaCC A704

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kocuria pelophila sp. nov., an actinobacterium isolated from the rhizosphere of a mangrove.	Hamada M, Shibata C, Tamura T, Nurkanto A, Ratnakomala S, Lisdiyanti P, Suzuki KI	Int J Syst Evol Microbiol	10.1099/ijsem.0.001186	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43101

Moriyuki Hamada, Chiyo Shibata, Tomohiko Tamura, Arif Nurkanto, Shanti Ratnakomala, Puspita Lisdiyanti, Ken-ichiro Suzuki: Kocuria pelophila sp. nov., an actinobacterium isolated from the rhizosphere of a mangrove. IJSEM 66: 3276 - 3280 2016 ( DOI 10.1099/ijsem.0.001186 , PubMed 27221097 )

* These data were automatically processed and therefore are not curated

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