Campylobacter pinnipediorum (CCUG 69570, LMG 29472, RM 17260)

Name: Campylobacter pinnipediorum (CCUG 69570, LMG 29472, RM 17260)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140488

Type strain

Culture col. no. CCUG 69570 LMG 29472 RM 17260 DSM 112337

NCBI tax ID(s) 1965231 1660067

Special Collections DSMZ CCUG Literature strains

History DSMZ <- CCUG; CCUG 69570 <- W. C. Miller, University of California, Davis; RM17260

Links

Campylobacter pinnipediorum CCUG 69570 is a microaerotolerant, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Abscess of California sea lion Juvenile.

Gram-negative rod-shaped colony-forming microaerotolerant genome sequence Bacteria

Name and taxonomic classification

SI-ID 400007

LMG 29472,DSM 112337,CCUG 69570

@ref 20215

Last LPSN update 2026-05-29 08:39:43

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter pinnipediorum

Full scientific name Campylobacter pinnipediorum Gilbert et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
43235	negative	rod-shaped
125438	negative		97.788
125439	negative		97.999

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Colony size	Colony color	Colony shape	Incubation period	Medium used
43235	alpha	1	0.5-1 mm	transparent to beige or white	circular	3 days	Columbia agar with 5 % sheep blood (microaerobic)

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
43235	Columbia agar with 5 % sheep blood (microaerobic)
43235	Skirrow agar
67674	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
43235	charcoal cefoperazone deoxycholate agar
43235	Mueller - Hinton agar

Culture temp

@ref	Growth	Type	Temperature (°C)
43235	negative	growth	42
43235	negative	growth	22
43235	positive	growth	25
43235	positive	growth	37
63624	positive	growth	37
67674	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43235	microaerotolerant
63624	microaerophile
125439	facultative anaerobe	90.948

Spore formation

@ref	Spore formation	Confidence
125438		94.434
125439		99.795

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43235	606565 ChEBI	hippurate	-	hydrolysis
43235		indoxyl acetate	-	hydrolysis
43235	17632 ChEBI	nitrate	+	reduction
43235	16199 ChEBI	urea	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Is sensitive	Sensitivity conc.
43235	124991	cefalotin		30 µg (disc)
43235	100147	nalidixic acid		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43235	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
43235	catalase	+/-	1.11.1.6
43235	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Aquatic mammal
#Host Body-Site	#Other	#Abscess

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Host species	Sampling date
43235	Abscess of California sea lion (Z. californianus) Juvenile	San Diego, California	USA	USA	North America			Z. californianus
63624	Abscess,californian sea lion	San Diego,California	USA	USA	North America				2013-07-02
67674	abscess; californian sea lion	San Diego, California	USA	USA	North America	32.7	-117.167 32.7/-117.167

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM202192v1 assembly for Campylobacter pinnipediorum subsp. pinnipediorum RM17260	complete	GCA_002021925	1660067.5	2791355309	1660067	95.68

GC content

@ref	GC-content (mol%)	Method
43235	30.4-31	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM202192v1 assembly for Campylobacter pinnipediorum subsp. pinnipediorum RM17260
BV-BRC: 1660067.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.95	no
125439	motility	BacteriaNetⓘ	no	74.25	no
125439	gram_stain	BacteriaNetⓘ	negative	98.00	no
125439	spore_formation	BacteriaNetⓘ	no	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter pinnipediorum subsp. pinnipediorum RM17260
NCBI: GCA_002021925.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.79	yes
125438	anaerobic	anaerobicⓘ	no	70.16	no
125438	aerobic	aerobicⓘ	no	84.39	yes
125438	spore-forming	spore-formingⓘ	no	94.43	no
125438	thermophilic	thermophileⓘ	no	89.76	yes
125438	flagellated	motile2+ⓘ	yes	62.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Campylobacter pinnipediorum sp. nov., isolated from pinnipeds, comprising Campylobacter pinnipediorum subsp. pinnipediorum subsp. nov. and Campylobacter pinnipediorum subsp. caledonicus subsp. nov.	Gilbert MJ, Miller WG, Leger JS, Chapman MH, Timmerman AJ, Duim B, Foster G, Wagenaar JA	Int J Syst Evol Microbiol	10.1099/ijsem.0.001894	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43235	Maarten J. Gilbert, William G. Miller, Judy St. Leger, Mary H. Chapman, Arjen J. Timmerman, Birgitta Duim, Geoffrey Foster, Jaap A. Wagenaar: Campylobacter pinnipediorum sp. nov., isolated from pinnipeds, comprising Campylobacter pinnipediorum subsp. Pinnipediorum subsp. nov. and Campylobacter pinnipediorum subsp. caledonicus subsp. nov.. IJSEM 67: 1961 - 1968 2017 ( DOI 10.1099/ijsem.0.001894 , PubMed 28629508 )
#63624	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 69570
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67674	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112337
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Campylobacter pinnipediorum (CCUG 69570, LMG 29472, RM 17260)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002021925

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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