Name: Paracoccus hibisci THG-T2.8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140480

Type strain:

Species: Paracoccus hibisci

Strain Designation: THG-T2.8

Culture col. no.: KACC 18932, CCTCC AB 2016181

NCBI tax ID(s): 2010990 (species)

Section

Paracoccus hibisci THG-T2.8 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from soil sample from rhizosphere of a Mugunghwa flower.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus hibisci**
	Full Scientific Name (LPSN)	Paracoccus hibisci Yan et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43256]	Gram stain	negative

[Ref.: #43256]	Cell length	1.2-1.4 µm

[Ref.: #43256]	Cell width	0.6-0.7 µm

[Ref.: #43256]	Cell shape	rod-shaped

[Ref.: #43256]	Motility	yes

[Ref.: #43256]	Flagellum arrangement	monotrichous

[Ref.: #43256]	Colony color	orange
[Ref.: #43256]	Colony shape	circular
[Ref.: #43256]	Cultivation medium used	trypticase soy agar (TSA)

Information on culture and growth conditions Culture and growth conditions

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Culture medium

trypticase soy agar (TSA)

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Culture medium growth

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Culture medium

Luria Bertani agar (LA; Oxoid)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

marine agar (MA)

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Culture medium growth

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Culture medium

nutritient agar (NA)

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Culture medium growth

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Culture medium

MacConkey agar (MCA)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43256]			optimum	28 °C
[Ref.: #43256]			growth	10-37 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43256]			optimum	7
[Ref.: #43256]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43256]		NaCl		growth	0-5	%
[Ref.: #43256]		NaCl		optimum	1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43256]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43256]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43256]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #43256]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43256]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43256]	adipate ChEBI	-	assimilation
[Ref.: #43256]	casein	-	hydrolysis
[Ref.: #43256]	cellulose ChEBI	-	hydrolysis
[Ref.: #43256]	chitin ChEBI	-	hydrolysis
[Ref.: #43256]	citrate ChEBI	+	assimilation
[Ref.: #43256]	D-glucose ChEBI	+	assimilation
[Ref.: #43256]	D-mannitol ChEBI	+	assimilation
[Ref.: #43256]	D-mannose ChEBI	+	assimilation
[Ref.: #43256]	D-ribose ChEBI	+	assimilation
[Ref.: #43256]	D-sorbitol ChEBI	+	assimilation
[Ref.: #43256]	decanoate ChEBI	-	assimilation
[Ref.: #43256]	dna ChEBI	+	hydrolysis
[Ref.: #43256]	gelatin ChEBI	+	hydrolysis
[Ref.: #43256]	glucose ChEBI	-	builds acid from
[Ref.: #43256]	glycogen ChEBI	-	assimilation
[Ref.: #43256]	itaconate ChEBI	-	assimilation
[Ref.: #43256]	L-alanine ChEBI	+	assimilation
[Ref.: #43256]	L-arabinose ChEBI	+	assimilation
[Ref.: #43256]	L-fucose ChEBI	+	assimilation
[Ref.: #43256]	L-histidine ChEBI	-	assimilation
[Ref.: #43256]	L-proline ChEBI	-	assimilation
[Ref.: #43256]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43256]	L-serine ChEBI	+	assimilation
[Ref.: #43256]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #43256]	lactate ChEBI	+	assimilation
[Ref.: #43256]	malate ChEBI	+	assimilation
[Ref.: #43256]	maltose ChEBI	-	assimilation
[Ref.: #43256]	melibiose ChEBI	-	assimilation
[Ref.: #43256]	methanol ChEBI	+	growth
[Ref.: #43256]	methylamine ChEBI	+	growth
[Ref.: #43256]	myo-inositol ChEBI	-	assimilation
[Ref.: #43256]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43256]	nitrate ChEBI	-	reduction
[Ref.: #43256]	phenylacetate ChEBI	-	assimilation
[Ref.: #43256]	propionate ChEBI	+	assimilation
[Ref.: #43256]	sodium acetate ChEBI	+	assimilation
[Ref.: #43256]	sodium citrate ChEBI	+	assimilation
[Ref.: #43256]	sodium malonate ChEBI	-	assimilation
[Ref.: #43256]	starch ChEBI	+	hydrolysis
[Ref.: #43256]	suberic acid ChEBI	-	assimilation
[Ref.: #43256]	sucrose ChEBI	+	assimilation
[Ref.: #43256]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43256]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43256]	valerate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43256]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43256]	acid phosphatase	+	3.1.3.2
[Ref.: #43256]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43256]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43256]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43256]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43256]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43256]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43256]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43256]	beta-galactosidase	-	3.2.1.23
[Ref.: #43256]	beta-glucosidase	+	3.2.1.21
[Ref.: #43256]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43256]	catalase	+	1.11.1.6
[Ref.: #43256]	cystine arylamidase	+	3.4.11.3
[Ref.: #43256]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43256]	esterase (C 4)	+
[Ref.: #43256]	esterase Lipase (C 8)	+
[Ref.: #43256]	leucine arylamidase	+	3.4.11.1
[Ref.: #43256]	lipase (C 14)	-
[Ref.: #43256]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43256]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43256]	trypsin	+	3.4.21.4
[Ref.: #43256]	urease	+	3.5.1.5
[Ref.: #43256]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43256]	Sample type/isolated from	soil sample from rhizosphere of a Mugunghwa flower
[Ref.: #43256]	Sampling date	2015-10-05
[Ref.: #43256]	Geographic location (country and/or sea, region)	Kyung Hee University, Yongin
[Ref.: #43256]	Country	Republic of Korea
[Ref.: #43256]	Country ISO 3 Code	KOR
[Ref.: #43256]	Continent	Asia
[Ref.: #43256]	Geographic location	37.0000°/127.0000°
[Ref.: #43256]	Enrichment culture	tryptone soya agar (TSA; Oxoid)
[Ref.: #43256]	Enrichment culture duration	1 week
[Ref.: #43256]	Enrichment culture temperature	30 ̊C
[Ref.: #43256]	Isolation/enrichment procedure	serial dilution plating technique
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43256]	Paracoccus sp. strain THG-T2.8 16S ribosomal RNA gene, partial sequence	KX456189	1347	GenBank	2010990 tax ID

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GC-content

65.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

KACC 18932, CCTCC AB 2016181

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus hibisci sp. nov., isolated from the rhizosphere of Hibiscus syriacus L. (Mugunghwa flower).	Yan ZF, Moya G, Lin P, Won KH, Yang JE, Li CT, Kook M, Wang QJ, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001874	2017	*
Phylogeny	Paracoccus everestensis sp. nov., a novel bacterium with great antioxidant capacity isolated from the north slope of Mount Everest.	Cui X, Liu Y, Xu Y, Chen T, Zhang S, Wang J, Yang R, Liu G, Zhang W, Zhang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.005562	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43256

Zheng-Fei Yan, Gabriela Moya, Pei Lin, Kyung-Hwa Won, Jung-Eun Yang, Chang-Tian Li, MooChang Kook, Qi-Jun Wang, Tae-Hoo Yi: Paracoccus hibisci sp. nov., isolated from the rhizosphere of Hibiscus syriacus L. (Mugunghwa flower). IJSEM 67: 1849 - 1854 2017 ( DOI 10.1099/ijsem.0.001874 , PubMed 28598318 )

* These data were automatically processed and therefore are not curated

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