Paenibacillus intestini (KCTC 33832, JCM 31621, LAH16)

Name: Paenibacillus intestini (KCTC 33832, JCM 31621, LAH16)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140475

Type strain

Strain Designation LAH16

Culture col. no. KCTC 33832 JCM 31621 LAH16

NCBI tax ID(s) 1792175

Special Collections JCM KCTC Literature strains

History J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; LAH16. <- Jin-Woo Bae, Kyung Hee Univ.

Links

Paenibacillus intestini LAH16 is a facultative anaerobe, spore-forming, Gram-negative bacterium that forms circular colonies and was isolated from hindgut of the honey bee A. mellifera.

spore-forming Gram-negative motile rod-shaped colony-forming facultative anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27667

KCTC 33832,JCM 31621

@ref 20215

Last LPSN update 2026-02-09 11:33:38

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus intestini

Full scientific name Paenibacillus intestini Yun et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
43251	negative	1-4 µm	0.5-0.6 µm	rod-shaped
67771				rod-shaped
67771	negative

Colony morphology

@ref	Colony color	Colony shape	Medium used
43251	greyish	circular	Columbia Agar containing 5 % sheep blood (CBA; BD)
43251	yellowish-white	circular	Luria-Bertani Agar (LA; BD)

Culture and growth conditions

Culture medium

@ref	Name	Growth
43251	CBA
43251	LA

Culture temp

@ref	Growth	Type	Temperature (°C)
43251	positive	optimum	20-37
43251	positive	growth	10-37
67770	positive	growth	28
67771	positive	growth	30-37

Culture pH

@ref	Ability	Type	PH	PH range
43251	positive	optimum	6.0-8.0
43251	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43251	facultative anaerobe
67771	facultative anaerobe

Spore formation

@ref	Type of spore	Spore formation
43251	endospore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43251	NaCl	positive	growth	0-6 %
43251	NaCl	positive	optimum	0-3 %

Observation

@ref	Observation
67770	quinones: MK-7
67771	quinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43251	58143 ChEBI	5-dehydro-D-gluconate	-	builds acid from
43251	27613 ChEBI	amygdalin	+	builds acid from
43251	18305 ChEBI	arbutin	+	builds acid from
43251	17057 ChEBI	cellobiose	+	builds acid from
43251	17108 ChEBI	D-arabinose	+	builds acid from
43251	18333 ChEBI	D-arabitol	-	builds acid from
43251	15824 ChEBI	D-fructose	+	builds acid from
43251	28847 ChEBI	D-fucose	-	builds acid from
43251	12936 ChEBI	D-galactose	+	builds acid from
43251	17634 ChEBI	D-glucose	+	builds acid from
43251	62318 ChEBI	D-lyxose	-	builds acid from
43251	16899 ChEBI	D-mannitol	+	builds acid from
43251	16024 ChEBI	D-mannose	+	builds acid from
43251	16988 ChEBI	D-ribose	+	builds acid from
43251	17924 ChEBI	D-sorbitol	+	builds acid from
43251	16443 ChEBI	D-tagatose	-	builds acid from
43251	65327 ChEBI	D-xylose	+	builds acid from
43251	4853 ChEBI	esculin	+	builds acid from
43251	28066 ChEBI	gentiobiose	+	builds acid from
43251	24265 ChEBI	gluconate	+	builds acid from
43251	17754 ChEBI	glycerol	+	builds acid from
43251	28087 ChEBI	glycogen	+	builds acid from
43251	15443 ChEBI	inulin	-	builds acid from
43251	30849 ChEBI	L-arabinose	+	builds acid from
43251	18403 ChEBI	L-arabitol	-	builds acid from
43251	18287 ChEBI	L-fucose	+	builds acid from
43251	62345 ChEBI	L-rhamnose	+	builds acid from
43251	65328 ChEBI	L-xylose	-	builds acid from
43251	17716 ChEBI	lactose	+	builds acid from
43251	17306 ChEBI	maltose	+	builds acid from
43251	6731 ChEBI	melezitose	+	builds acid from
43251	28053 ChEBI	melibiose	+	builds acid from
43251	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
43251	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43251	74863 ChEBI	methyl beta-D-xylopyranoside	+	builds acid from
43251	17268 ChEBI	myo-inositol	+	builds acid from
43251	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43251	16634 ChEBI	raffinose	+	builds acid from
43251	17814 ChEBI	salicin	+	builds acid from
43251	28017 ChEBI	starch	+	builds acid from
43251	17992 ChEBI	sucrose	+	builds acid from
43251	27082 ChEBI	trehalose	+	builds acid from
43251	32528 ChEBI	turanose	+	builds acid from
43251	17151 ChEBI	xylitol	-	builds acid from

Enzymes

@ref	Value	Activity	Ec
43251	acid phosphatase	+	3.1.3.2
43251	alkaline phosphatase	+	3.1.3.1
43251	alpha-chymotrypsin	-	3.4.21.1
43251	alpha-fucosidase	-	3.2.1.51
43251	alpha-galactosidase	+	3.2.1.22
43251	alpha-glucosidase	-	3.2.1.20
43251	alpha-mannosidase	-	3.2.1.24
43251	beta-galactosidase	+	3.2.1.23
43251	beta-glucosidase	+	3.2.1.21
43251	beta-glucuronidase	-	3.2.1.31
43251	catalase	+	1.11.1.6
43251	cystine arylamidase	-	3.4.11.3
43251	cytochrome oxidase	+	1.9.3.1
43251	esterase (C 4)	+
43251	esterase Lipase (C 8)	+
43251	leucine arylamidase	-	3.4.11.1
43251	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43251	naphthol-AS-BI-phosphohydrolase	+
43251	trypsin	-	3.4.21.4
43251	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

43251

Fatty acid	Percentage
C15:0 anteiso	46.4
C16:0 iso	18.1
C16:0	11.6
C17:0 anteiso	7.4
C14:0	3.9
C16:1ω11c	2.9
C15:0 iso	2.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	#Stomach

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure	Host species
43251	hindgut of the honey bee A. mellifera	Republic of Korea	KOR	Asia	Luria-Bertani Agar (LA; BD)	14 days	34	standard dilution-plating method
67770	Hindgut of the honey bee (Apis mellifera)	Republic of Korea	KOR	Asia					Apis mellifera
67771	From `Apis mellifera` hindgut	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KU573975 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	18
Soil Samples	93
Animal Samples	40
Plant Samples	728
Total Samples	879

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43251	Paenibacillus intestini strain LAH16 16S ribosomal RNA gene, partial sequence	KU573975	1453		1792175

GC content

@ref	GC-content (mol%)	Method
43251	46.1	Thermal denaturation, fluorometry
67771	46.1	fluorimetric
67770	46.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus apis sp. nov. and Paenibacillus intestini sp. nov., isolated from the intestine of the honey bee Apis mellifera.	Yun JH, Lee JY, Kim PS, Jung MJ, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.001887	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43251	Ji-Hyun Yun, June-Young Lee, Pil Soo Kim, Mi-Ja Jung, Jin-Woo Bae: Paenibacillus apis sp. nov. and Paenibacillus intestini sp. nov., isolated from the intestine of the honey bee Apis mellifera. IJSEM 67: 1918 - 1924 2017 ( DOI 10.1099/ijsem.0.001887 , PubMed 28613144 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus intestini (KCTC 33832, JCM 31621, LAH16)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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