Name: Nioella sediminis JS7-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140471

Type strain:

Species: Nioella sediminis

Strain Designation: JS7-11

Culture col. no.: MCCC 1A00710, KCTC 42144

NCBI tax ID(s): 1912092 (species)

Section

Nioella sediminis JS7-11 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from surface sediment.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Nioella*
	Species	**Nioella sediminis**
	Full Scientific Name (LPSN)	Nioella sediminis Liu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43196]	Gram stain	negative

[Ref.: #43196]	Cell length	1.3-2.6 µm

[Ref.: #43196]	Cell width	0.8-1.5 µm

[Ref.: #43196]	Cell shape	rod-shaped

[Ref.: #43196]	Motility	no

[Ref.: #43196]	Colony size	2-3 mm
[Ref.: #43196]	Colony color	cream
[Ref.: #43196]	Colony shape	circular
[Ref.: #43196]	Incubation period	3 days
[Ref.: #43196]	Cultivation medium used	marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43196]

Culture medium

marine agar (MA)

[Ref.: #43196]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43196]			optimum	25-30 °C
[Ref.: #43196]			growth	10-40 °C

[Ref.: #43196]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43196]			optimum	7
[Ref.: #43196]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43196]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43196]		NaCl		growth	1-12	%(w/v)
[Ref.: #43196]		NaCl		optimum	3-4	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43196]	adipate ChEBI	-	assimilation
[Ref.: #43196]	amygdalin ChEBI	-	builds acid from
[Ref.: #43196]	arabinose ChEBI	-	builds acid from
[Ref.: #43196]	citrate ChEBI	-	assimilation
[Ref.: #43196]	D-glucose ChEBI	-	fermentation
[Ref.: #43196]	D-glucose ChEBI	-	assimilation
[Ref.: #43196]	D-mannitol ChEBI	-	assimilation
[Ref.: #43196]	D-mannose ChEBI	-	assimilation
[Ref.: #43196]	decanoate ChEBI	-	assimilation
[Ref.: #43196]	esculin ChEBI	+	hydrolysis
[Ref.: #43196]	gelatin ChEBI	+	hydrolysis
[Ref.: #43196]	glucose ChEBI	-	builds acid from
[Ref.: #43196]	L-arabinose ChEBI	-	assimilation
[Ref.: #43196]	malate ChEBI	-	assimilation
[Ref.: #43196]	maltose ChEBI	-	assimilation
[Ref.: #43196]	mannitol ChEBI	-	builds acid from
[Ref.: #43196]	melibiose ChEBI	-	builds acid from
[Ref.: #43196]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43196]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43196]	nitrate ChEBI	+	reduction
[Ref.: #43196]	phenylacetate ChEBI	-	assimilation
[Ref.: #43196]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43196]	rhamnose ChEBI	-	builds acid from
[Ref.: #43196]	sodium citrate ChEBI	-	assimilation
[Ref.: #43196]	sorbitol ChEBI	-	builds acid from
[Ref.: #43196]	starch ChEBI	-	hydrolysis
[Ref.: #43196]	sucrose ChEBI	-	builds acid from
[Ref.: #43196]	tributyrin ChEBI	+	hydrolysis
[Ref.: #43196]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43196]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43196]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43196]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43196]	acetoin ChEBI	yes
[Ref.: #43196]	hydrogen sulfide ChEBI	no
[Ref.: #43196]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43196]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #43196]	acid phosphatase	+	3.1.3.2
[Ref.: #43196]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43196]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43196]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43196]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43196]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43196]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43196]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43196]	beta-galactosidase	-	3.2.1.23
[Ref.: #43196]	beta-glucosidase	-	3.2.1.21
[Ref.: #43196]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43196]	catalase	+	1.11.1.6
[Ref.: #43196]	cystine arylamidase	+	3.4.11.3
[Ref.: #43196]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43196]	esterase (C 4)	+
[Ref.: #43196]	esterase Lipase (C 8)	+
[Ref.: #43196]	gelatinase	+
[Ref.: #43196]	leucine arylamidase	+	3.4.11.1
[Ref.: #43196]	lipase (C 14)	+
[Ref.: #43196]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43196]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43196]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43196]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43196]	trypsin	-	3.4.21.4
[Ref.: #43196]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43196]	urease	-	3.5.1.5
[Ref.: #43196]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43196]

Fatty acid	Percentage
C18:1ω6c / C18:1ω7c	70
C16:0	11.9
C16:0 2OH	4.6
C18:0	2.5
C10:0 3OH	2
C18:1ω7c 11-methyl	1.8
C12:0 3OH	1.4
C19:0 cyclo ω8c	1.1
C18:1 2OH	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43196]	Sample type/isolated from	surface sediment
[Ref.: #43196]	Geographic location (country and/or sea, region)	Jiulong River, Fujian province
[Ref.: #43196]	Country	China
[Ref.: #43196]	Country ISO 3 Code	CHN
[Ref.: #43196]	Continent	Asia
[Ref.: #43196]	Geographic location	24.0000°/117.0000°
[Ref.: #43196]	Enrichment culture	modified R2A medium (BD Difco)
[Ref.: #43196]	Enrichment culture duration	7 days
[Ref.: #43196]	Enrichment culture temperature	28 ̊C
[Ref.: #43196]	Isolation/enrichment procedure	standard dilution plating technique
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY012322 (>99% sequence identity) for Nioella sediminis from Microbeatlas

Aquatic Samples	259
Soil Samples	24
Animal Samples	3
Plant Samples	9
Total Samples	295

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43196]	Nioella sp. JS7-11 16S ribosomal RNA gene, partial sequence	KY012322	1461	GenBank	1912092 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nioella sediminis JS7-11	GCA_001879695	contig	GenBank	1912092 tax ID	*
[Ref.: #66792]	Nioella sediminis JS7-11	2791354906	draft	JGI IMG/M	1912092 tax ID	*

[Ref.: #43196]

GC-content

63.4 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #43196]

Culture collection no.

MCCC 1A00710, KCTC 42144

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alterinioella nitratireducens gen. nov., sp. nov., Isolated from Seawater in the West Pacific Ocean.	Kong YH, Sun C, Guo LL, Xu L, Wu YH, Xu XW	Curr Microbiol	10.1007/s00284-021-02475-z	2021	*
Phylogeny	Nioella ostreopsis sp. nov., isolated from toxic dinoflagellate, Ostreopsis lenticularis.	Yang Q, Jiang Z, Zhou X, Zhang R, Wu Y, Lou L, Ma Z, Wang D, Ge Y, Zhang X, Yu X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003816	2020	*
Phylogeny	Nioella aestuarii sp. nov., of the family Rhodobacteraceae, isolated from tidal flat.	Cha IT, Cho ES, Park JM, Yeh JY, Seo MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002442	2017	*
Phylogeny	Nioella sediminis sp. nov., isolated from surface sediment and emended description of the genus Nioella.	Liu Y, Du J, Lai Q, Dong C, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001798	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43196

Yang Liu, Juan Du, Qiliang Lai, Chunming Dong, Zongze Shao: Nioella sediminis sp. nov., isolated from surface sediment and emended description of the genus Nioella. IJSEM 67: 1271 - 1274 2017 ( DOI 10.1099/ijsem.0.001798 , PubMed 28100309 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Nioella sediminis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF