Rhodanobacter humi (KEMB 9005-480, KACC 19048, NBRC 112473)

Name: Rhodanobacter humi (KEMB 9005-480, KACC 19048, NBRC 112473)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140469

Type strain

Strain Designation RS22

Culture col. no. KEMB 9005-480 KACC 19048 NBRC 112473 RS22

NCBI tax ID(s) 1888173

Special Collections Literature strains

Links

Rhodanobacter humi RS22 is an aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from forest soil.

Gram-negative rod-shaped colony-forming aerobe mesophilic 16S sequence

Name and taxonomic classification

SI-ID 133669

NBRC 112473

@ref 20215

Last LPSN update 2025-12-16 10:03:36

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Rhodanobacteraceae

Genus Rhodanobacter

Species Rhodanobacter humi

Full scientific name Rhodanobacter humi Dahal and Kim 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43208	negative	1.8-2.9 µm	0.8-1.2 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43208	2-3 mm	yellow	circular	4 days	tryptic soy agar (TSA)

Culture and growth conditions

Culture medium

@ref	Name	Growth
43208	tryptic soy agar (TSA)
43208	Reasoner's 2A agar (R2A)
43208	nutritient agar (NA)
43208	LBA
43208	BHI
43208	veal infusion agar
43208	marine ager (MA)
43208	MacConkey agar
43208	potato dextrose agar

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43208	positive	optimum	25-30	mesophilic
43208	positive	growth	15-35

Culture pH

@ref	Ability	Type	PH
43208	positive	optimum	6.5-9.5
43208	positive	growth	4.5-11.0

Physiology and metabolism

Oxygen tolerance

43208

Oxygen toleranceaerobe

Spore formation

43208

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43208	NaCl	positive	growth	0-4 %(w/v)
43208	NaCl	positive	optimum	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43208	16808 ChEBI	2-dehydro-D-gluconate	-	assimilation
43208	16193 ChEBI	3-hydroxybenzoate	+	assimilation
43208	37054 ChEBI	3-hydroxybutyrate	+	assimilation
43208	17879 ChEBI	4-hydroxybenzoate	-	assimilation
43208	58143 ChEBI	5-dehydro-D-gluconate	-	assimilation
43208	17128 ChEBI	adipate	-	assimilation
43208	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43208		casein	-	hydrolysis
43208	17029 ChEBI	chitin	-	hydrolysis
43208	17634 ChEBI	D-glucose	+	assimilation
43208	16899 ChEBI	D-mannitol	-	assimilation
43208	16024 ChEBI	D-mannose	-	assimilation
43208	16988 ChEBI	D-ribose	-	assimilation
43208	17924 ChEBI	D-sorbitol	-	assimilation
43208	27689 ChEBI	decanoate	-	assimilation
43208	16991 ChEBI	dna	+	hydrolysis
43208		esculin ferric citrate	+	hydrolysis
43208	5291 ChEBI	gelatin	-	hydrolysis
43208	17234 ChEBI	glucose	+	fermentation
43208	28087 ChEBI	glycogen	-	assimilation
43208	17368 ChEBI	hypoxanthine	-	hydrolysis
43208	35581 ChEBI	indole	-	hydrolysis
43208	17240 ChEBI	itaconate	-	assimilation
43208	16977 ChEBI	L-alanine	-	assimilation
43208	30849 ChEBI	L-arabinose	-	assimilation
43208	18287 ChEBI	L-fucose	+	assimilation
43208	15971 ChEBI	L-histidine	-	assimilation
43208	17203 ChEBI	L-proline	+	assimilation
43208	62345 ChEBI	L-rhamnose	-	assimilation
43208	17115 ChEBI	L-serine	+	assimilation
43208	24996 ChEBI	lactate	+	assimilation
43208	25115 ChEBI	malate	-	assimilation
43208	17306 ChEBI	maltose	+	assimilation
43208	28053 ChEBI	melibiose	-	assimilation
43208	17268 ChEBI	myo-inositol	-	assimilation
43208	506227 ChEBI	N-acetylglucosamine	+	assimilation
43208	17632 ChEBI	nitrate	-	reduction
43208	18401 ChEBI	phenylacetate	-	assimilation
43208	32032 ChEBI	potassium gluconate	-	assimilation
43208	17272 ChEBI	propionate	-	assimilation
43208	17814 ChEBI	salicin	-	assimilation
43208	32954 ChEBI	sodium acetate	+	assimilation
43208	53258 ChEBI	sodium citrate	-	assimilation
43208	62983 ChEBI	sodium malonate	-	assimilation
43208	28017 ChEBI	starch	-	hydrolysis
43208	9300 ChEBI	suberic acid	-	assimilation
43208	17992 ChEBI	sucrose	-	assimilation
43208	27897 ChEBI	tryptophan	-	energy source
43208	53423 ChEBI	tween 40	+	hydrolysis
43208	53425 ChEBI	tween 60	+	hydrolysis
43208	53426 ChEBI	tween 80	-	hydrolysis
43208	18186 ChEBI	tyrosine	+	hydrolysis
43208	31011 ChEBI	valerate	-	assimilation
43208	15318 ChEBI	xanthine	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43208	16136 ChEBI	hydrogen sulfide
43208	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
43208	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
43208	acid phosphatase	+	3.1.3.2
43208	alkaline phosphatase	+	3.1.3.1
43208	alpha-chymotrypsin	+	3.4.21.1
43208	alpha-fucosidase	+	3.2.1.51
43208	alpha-galactosidase	+	3.2.1.22
43208	alpha-glucosidase	+	3.2.1.20
43208	alpha-mannosidase	+	3.2.1.24
43208	beta-galactosidase	+	3.2.1.23
43208	beta-glucosidase	+	3.2.1.21
43208	beta-glucuronidase	-	3.2.1.31
43208	catalase	+	1.11.1.6
43208	cystine arylamidase	+	3.4.11.3
43208	cytochrome oxidase	+	1.9.3.1
43208	DNase	+
43208	esterase (C 4)	+
43208	esterase Lipase (C 8)	+
43208	leucine arylamidase	+	3.4.11.1
43208	lipase (C 14)	-
43208	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43208	naphthol-AS-BI-phosphohydrolase	+
43208	trypsin	-	3.4.21.4
43208	tryptophan deaminase	-	4.1.99.1
43208	urease	-	3.5.1.5
43208	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43208

Fatty acid	Percentage
C17:1 iso ω9c / C16:0 10-methyl	25.7
C15:0 iso	20.7
C17:0 iso	13.7
C16:0 iso	8.4
C15:0 anteiso	6
C16:0	5.3
C11:0 iso	4.8
C11:0 iso 3OH	4.3
C16:1ω7c / C16:1ω6c	3.8
C13:0 iso 3OH	2.4
C17:1ω6c	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture
43208	forest soil	Kyonggi University, Suwon	Republic of Korea	KOR	Asia	37	127 37/127	R2A broth

Taxonmaps

69479

Global distribution of 16S sequence KX674374 (>99% sequence identity) for Rhodanobacter humi from Microbeatlas

Aquatic Samples	106
Soil Samples	976
Animal Samples	104
Plant Samples	222
Total Samples	1408

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43208	Rhodanobacter humi strain RS22 16S ribosomal RNA gene, partial sequence	KX674374	1479		1888173

GC content

@ref	GC-content (mol%)	Method
43208	63.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodanobacter humi sp. nov., an acid-tolerant and alkalitolerant gammaproteobacterium isolated from forest soil.	Dahal RH, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001786	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43208	Ram Hari Dahal, Jaisoo Kim: Rhodanobacter humi sp. nov., an acid-tolerant and alkalitolerant gammaproteobacterium isolated from forest soil. IJSEM 67: 1185 - 1190 2017 ( DOI 10.1099/ijsem.0.001786 , PubMed 28073405 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Rhodanobacter humi (KEMB 9005-480, KACC 19048, NBRC 112473)

Name and taxonomic classification