Name: Lewinella cohaerens II-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14046

Type strain:

Species: Lewinella cohaerens

Strain Designation: II-2

Culture col. no.: DSM 23179, ATCC 23123, NBRC 102661, NCIMB 12855

Strain history: <- NBRC <- NCIMB <- R. A. Lewin, Scripps Inst. Oceanography, Univ. California, La Jolla, USA; II-2

NCBI tax ID(s): 1122176 (strain), 70995 (species)

SI-ID 37903

ATCC 23123, ATCC 19593, NCIMB 12855, NCMB1407, NBRC 102661, DSM 23179

Section

Lewinella cohaerens II-2 is an aerobe, chemoorganotroph, mesophilic bacterium that was isolated from mid-littoral mud.

Gram-negative
rod-shaped
aerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Saprospiria*
	Order	*Saprospirales*
	Family	*Lewinellaceae*
	Genus	*Lewinella*
	Species	**Lewinella cohaerens**
	Full Scientific Name (LPSN)	Lewinella cohaerens (Lewin 1970) Sly et al. 1998

Synonym

Herpetosiphon cohaerens

Information on morphological and physiological properties Morphology

[Ref.: #28558]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.984

[Ref.: #28558]	Cell length	1.2-2 µm

[Ref.: #28558]	Cell width	0.3-0.5 µm

[Ref.: #28558]	Cell shape	rod-shaped

[Ref.: #28558]	Colony color	light orange
[Ref.: #28558]	Cultivation medium used	MA

Multimedia content

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

Marine agar (MA)

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #16553]		growth	25 °C
[Ref.: #28558]		optimum	25 °C
[Ref.: #28558]		growth	10-30 °C
[Ref.: #28558]	no	growth	4 °C
[Ref.: #28558]	no	growth	35-42 °C

[Ref.: #16553]	Temperature range	mesophilic
[Ref.: #28558]	Temperature range	mesophilic
[Ref.: #28558]	Temperature range	psychrophilic

	Kind of pH		pH
[Ref.: #28558]		optimum	7
[Ref.: #28558]	no	growth	5
[Ref.: #28558]		growth	6-8

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Nutrition type

chemoorganotroph

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.981

	Salt	Tested relation		Salt conc.
[Ref.: #28558]	NaCl		growth	2-4	%(w/v)
[Ref.: #28558]	NaCl	no	growth	0	%(w/v)
[Ref.: #28558]	NaCl	no	growth	1	%(w/v)
[Ref.: #28558]	NaCl	no	growth	6	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28558]	agar ChEBI	-	degradation
[Ref.: #28558]	ammonium ChEBI	-	nitrogen source
[Ref.: #28558]	amygdalin ChEBI	+/-	builds acid from
[Ref.: #28558]	arbutin ChEBI	+/-	builds acid from
[Ref.: #28558]	carboxymethylcellulose ChEBI	-	degradation
[Ref.: #28558]	carrageenan ChEBI	-	degradation
[Ref.: #28558]	casamino acids	+	nitrogen source
[Ref.: #28558]	casein	+	degradation
[Ref.: #28558]	cellobiose ChEBI	+	builds acid from
[Ref.: #28558]	cellulose ChEBI	-	degradation
[Ref.: #28558]	chitin ChEBI	-	degradation
[Ref.: #28558]	D-fucose ChEBI	+/-	builds acid from
[Ref.: #28558]	D-glucose ChEBI	+	builds acid from
[Ref.: #28558]	D-lyxose ChEBI	+	builds acid from
[Ref.: #28558]	D-tagatose ChEBI	+/-	builds acid from
[Ref.: #28558]	dna ChEBI	+	degradation
[Ref.: #28558]	esculin ChEBI	+	builds acid from
[Ref.: #28558]	gelatin ChEBI	+	degradation
[Ref.: #28558]	gentiobiose ChEBI	+	builds acid from
[Ref.: #28558]	L-fucose ChEBI	+/-	builds acid from
[Ref.: #28558]	lactose ChEBI	+	builds acid from
[Ref.: #28558]	melezitose ChEBI	+/-	builds acid from
[Ref.: #28558]	methyl alpha-D-glucopyranoside ChEBI	+/-	builds acid from
[Ref.: #28558]	nitrate ChEBI	-	reduction
[Ref.: #28558]	nitrite ChEBI	-	reduction
[Ref.: #28558]	peptone	+	nitrogen source
[Ref.: #28558]	sodium L-glutamate ChEBI	-	nitrogen source
[Ref.: #28558]	sodium nitrate ChEBI	-	nitrogen source
[Ref.: #28558]	starch ChEBI	+	degradation
[Ref.: #28558]	sulfate ChEBI	-	nitrogen source
[Ref.: #28558]	turanose ChEBI	+	builds acid from
[Ref.: #28558]	tween 20 ChEBI	+	degradation
[Ref.: #28558]	tween 40 ChEBI	+	degradation
[Ref.: #28558]	tween 80 ChEBI	+	degradation
[Ref.: #28558]	urea ChEBI	-	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #28558]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #28558]	arginine dihydrolase	-	3.5.3.6
[Ref.: #28558]	beta-galactosidase	+	3.2.1.23
[Ref.: #28558]	beta-glucosidase	+	3.2.1.21
[Ref.: #28558]	catalase	+	1.11.1.6
[Ref.: #28558]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16553]	Sample type/isolated from	mid-littoral mud
[Ref.: #16553]	Geographic location (country and/or sea, region)	Biarritz
[Ref.: #16553]	Country	France
[Ref.: #16553]	Country ISO 3 Code	FRA
[Ref.: #16553]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM295254 (>99% sequence identity) for Lewinella cohaerens subclade from Microbeatlas

Aquatic Samples	1591
Soil Samples	38
Animal Samples	177
Plant Samples	15
Total Samples	1821

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16553]	Lewinella cohaerens gene for 16S ribosomal RNA, partial sequence	AB301614	1446	ENA	70995 tax ID
[Ref.: #20218]	Lewinella cohaerens partial 16S rRNA gene, type strain ATCC 23123T	AM295254	1413	ENA	70995 tax ID	*
[Ref.: #20218]	Lewinella cohaerens 16S ribosomal RNA gene, partial sequence	AF039292	1425	ENA	70995 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lewinella cohaerens DSM 23179	GCA_000379805	scaffold	GenBank	1122176 tax ID	*
[Ref.: #66792]	Lewinella cohaerens DSM 23179	1122176.3	wgs	PATRIC	1122176 tax ID	*
[Ref.: #66792]	Lewinella cohaerens DSM 23179	2515154030	draft	JGI IMG/M	1122176 tax ID	*

[Ref.: #16553]	GC-content	45.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #16553]	GC-content	44.9 mol%
[Ref.: #28558]	GC-content	45 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lewinella cohaerens DSM 23179 DSM 23179 NCBI: GCA_000379805.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lewinella cohaerens DSM 23179 DSM 23179 NCBI: GCA_000379805.1
[Ref.: #69480]	motile	no	91.53	no
[Ref.: #69480]	flagellated	no	96.613	no
[Ref.: #69480]	gram-positive	no	97.725	yes
[Ref.: #69480]	anaerobic	no	99.154	yes
[Ref.: #69480]	aerobic	yes	88.537	yes
[Ref.: #69480]	halophile	no	83.388	no
[Ref.: #69480]	spore-forming	no	93.044	no
[Ref.: #69480]	thermophile	no	97.338	yes
[Ref.: #69480]	glucose-util	yes	87.985	no
[Ref.: #69480]	glucose-ferment	no	90.743	no

Availability in culture collections External links

[Ref.: #16553]

Culture collection no.

DSM 23179, ATCC 23123, NBRC 102661, NCIMB 12855

[Ref.: #83215]

SI-ID 37903

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lewinella agarilytica sp. nov., a novel marine bacterium of the phylum Bacteroidetes, isolated from beach sediment.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.65254-0	2007	*

References

#16553

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23179

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#28558

IJSEM 2946 2007 ( DOI 10.1099/ijs.0.65308-0 , PubMed 18048755 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83215

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37903.1 )

* These data were automatically processed and therefore are not curated

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Lewinella cohaerens DSM 23179 DSM 23179

Lewinella cohaerens DSM 23179 DSM 23179

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