Name: Clostridium merdae DSM 103669
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140416

Type strain:

Species: Clostridium merdae

Culture col. no.: DSM 103669, Marseille-P2953

Strain history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2953 <- Unité de Recherche pour les Maladies Tropicales Emergentes, Fédération de Bactériologie Viorologie Hygiène Hospitalière {2016}

NCBI tax ID(s): 1958780 (species)

Section

Clostridium merdae DSM 103669 is a mesophilic bacterium that was isolated from stool sample from patient.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	"Clostridium merdae"
	Full Scientific Name (LPSN)	Clostridium merdae Ndongo et al. 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43023]

Culture medium

CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)

[Ref.: #43023]

Culture medium growth

[Ref.: #43023]

Culture medium link

Medium recipe at MediaDive

[Ref.: #43023]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #43023]			growth	37 °C

[Ref.: #43023]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43023]	Sample type/isolated from	stool sample from patient
[Ref.: #43023]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #43023]	Country	France
[Ref.: #43023]	Country ISO 3 Code	FRA
[Ref.: #43023]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Infection	#Patient	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT732642 (>99% sequence identity) for Clostridium merdae from Microbeatlas

Aquatic Samples	53
Soil Samples	74
Animal Samples	587
Plant Samples	80
Total Samples	794

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43023]	Clostridium merdae partial 16S rRNA gene, type strain Marseille-P2953T	LT732642	1482	ENA	1958780 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium merdae Marseille-P2953	GCA_900176635	contig	GenBank	1958780 tax ID	*
[Ref.: #66792]	Clostridium merdae Marseille-P2953	2791355326	draft	JGI IMG/M	1958780 tax ID	*

Availability in culture collections External links

[Ref.: #43023]

Culture collection no.

DSM 103669, Marseille-P2953

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	'Collinsella phocaeensis' sp. nov., 'Clostridium merdae' sp. nov., 'Sutterella massiliensis' sp. nov., 'Sutturella timonensis' sp. nov., 'Enorma phocaeensis' sp. nov., 'Mailhella massiliensis' gen. nov., sp. nov., 'Mordavella massiliensis' gen. nov., sp. nov. and 'Massiliprevotella massiliensis' gen. nov., sp. nov., 9 new species isolated from fresh stool samples of healthy French patients.	Ndongo S, Cadoret F, Dubourg G, Delerce J, Fournier PE, Raoult D, Lagier JC	New Microbes New Infect	10.1016/j.nmni.2017.02.005	2017	*
	Taxonogenomic description of four new Clostridium species isolated from human gut: 'Clostridium amazonitimonense', 'Clostridium merdae', 'Clostridium massilidielmoense' and 'Clostridium nigeriense'.	Alou MT, Ndongo S, Fregere L, Labas N, Andrieu C, Richez M, Couderc C, Baudoin JP, Abrahao J, Brah S, Diallo A, Sokhna C, Cassir N, La Scola B, Cadoret F, Raoult D	New Microbes New Infect	10.1016/j.nmni.2017.11.003	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43023

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103669

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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