Name: Pseudodesulfovibrio senegalensis BLaC1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140414

Type strain:

Species: Pseudodesulfovibrio senegalensis

Strain Designation: BLaC1

Culture col. no.: DSM 101509, JCM 31063

Strain history: Z. Ben Ali Gam; Aix-Marseille Univ., France; BLaC1.

NCBI tax ID(s): 1721087 (species)

SI-ID 405030

DSM 101509

Section

Pseudodesulfovibrio senegalensis BLaC1 is an anaerobe, heterotroph, Gram-negative bacterium that was isolated from marine sediment.

Gram-negative
motile
rod-shaped
anaerobe
heterotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfovibrionales*
	Family	*Desulfovibrionaceae*
	Genus	*Pseudodesulfovibrio*
	Species	**Pseudodesulfovibrio senegalensis**
	Full Scientific Name (LPSN)	Pseudodesulfovibrio senegalensis (Thioye et al. 2017) Galushko and Kuever 2021

	Synonym	"Paradesulfovibrio* senegalensis"*
	Synonym	Desulfovibrio senegalensis
	Synonym	"Salidesulfovibrio* senegalensis"*

Information on morphological and physiological properties Morphology

[Ref.: #43904]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.983

[Ref.: #43904]	Cell length	2.0-4.0 µm

[Ref.: #43904]	Cell width	0.5 µm

[Ref.: #43904]	Cell shape	rod-shaped

[Ref.: #43904]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %94.73

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43021]

Culture medium

HALODESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 163)

[Ref.: #43021]

Culture medium growth

[Ref.: #43021]

Culture medium link

Medium recipe at MediaDive

[Ref.: #43021]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43021]	growth	37 °C
[Ref.: #43904]	growth	15-45 °C
[Ref.: #43904]	optimum	40 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #43021]	Temperature range	mesophilic
[Ref.: #43904]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43904]			optimum	7.5
[Ref.: #43904]			growth	5.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43904]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #43904]

Nutrition type

heterotroph

[Ref.: #43904]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.746

[Ref.: #43904]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43904]		NaCl		optimum	3	%(w/v)
[Ref.: #43904]		NaCl		growth	0.5-6.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43904]	acetate ChEBI	+	carbon source
[Ref.: #43904]	butanol ChEBI	-	carbon source
[Ref.: #43904]	elemental sulfur ChEBI	-	electron acceptor
[Ref.: #43904]	ethanol ChEBI	-	carbon source
[Ref.: #43904]	formate ChEBI	+	carbon source
[Ref.: #43904]	fumarate ChEBI	-	carbon source
[Ref.: #43904]	fumarate ChEBI	-	electron acceptor
[Ref.: #43904]	glycerol ChEBI	-	carbon source
[Ref.: #43904]	lactate ChEBI	+	carbon source
[Ref.: #43904]	malate ChEBI	-	carbon source
[Ref.: #43904]	methanol ChEBI	-	carbon source
[Ref.: #43904]	nitrate ChEBI	-	reduction
[Ref.: #43904]	propionate ChEBI	-	carbon source
[Ref.: #43904]	sulfate ChEBI	+	electron acceptor
[Ref.: #43904]	sulfite ChEBI	+	electron acceptor
[Ref.: #43904]	thiosulfate ChEBI	+	electron acceptor
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43021]	Sample type/isolated from	marine sediment
[Ref.: #43021]	Geographic location (country and/or sea, region)	Dakar, Hann Bay
[Ref.: #43021]	Country	Senegal
[Ref.: #43021]	Country ISO 3 Code	SEN
[Ref.: #43021]	Continent	Africa

[Ref.: #43904]	Sample type/isolated from	marine sediments recovered from Hann Bay, Senegal
[Ref.: #43904]	Geographic location (country and/or sea, region)	Hann Bay
[Ref.: #43904]	Country	Senegal
[Ref.: #43904]	Country ISO 3 Code	SEN
[Ref.: #43904]	Continent	Africa
[Ref.: #43904]	Enrichment culture	Sulfate-reducing bacteria (SRB) medium
[Ref.: #43904]	Enrichment culture composition	0.3 g/L KH2PO4, 0.2 g/L K2HPO4, 0.3 g/L NH4Cl, 1 g/L NaCl, 0.5 g/L KCl, 0.15 g/L CaCl2, 0.4 g/L MgCl2, 0.5 g/L cysteine HCl, 0.5 g/L yeast extract, 1 ml mineral element solution, 1 ml 0.1 % (w/v) resazurin, pH 7.2, 0.1 ml 2% Na 2S.9H2O, 0.1 ml 10% NaHCO3 lactate (20 mM) and sulfate (20 mM), 2% (w/v) agar
[Ref.: #43904]	Enrichment culture duration	1 week
[Ref.: #43904]	Enrichment culture temperature	30 ̊C

[Ref.: #67770]	Sample type/isolated from	Marine sediment from Hann Bay
[Ref.: #67770]	Country	Senegal
[Ref.: #67770]	Country ISO 3 Code	SEN
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT767981 (>99% sequence identity) for Desulfovibrio senegalensis subclade from Microbeatlas

Aquatic Samples	368
Soil Samples	19
Animal Samples	18
Plant Samples	14
Total Samples	419

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #43021]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43021]	Desulfovibrio senegalensis strain BlaC1 16S ribosomal RNA gene, partial sequence	KT767981	1420	ENA	1721087 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudodesulfovibrio senegalensis DSM 101509	GCA_008830225	contig	GenBank	1721087 tax ID
[Ref.: #66792]	Desulfovibrio senegalensis strain DSM 101509	1721087.3	wgs	PATRIC	1721087 tax ID	*
[Ref.: #66792]	Desulfovibrio senegalensis DSM 101509	2899427287	draft	JGI IMG/M	1721087 tax ID	*

[Ref.: #43021]

GC-content

55.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Desulfovibrio senegalensis strain DSM 101509 PATRIC: 1721087.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulfovibrio senegalensis strain DSM 101509 PATRIC: 1721087.3
[Ref.: #69480]	motile	yes	92.118	no
[Ref.: #69480]	gram-positive	no	99.151	yes
[Ref.: #69480]	anaerobic	yes	99.361	yes
[Ref.: #69480]	aerobic	no	98.591	yes
[Ref.: #69480]	halophile	no	60.636	no
[Ref.: #69480]	spore-forming	no	96.022	no
[Ref.: #69480]	glucose-util	no	61.417	no
[Ref.: #69480]	thermophile	no	92.522	no
[Ref.: #69480]	flagellated	yes	51.769	no
[Ref.: #69480]	glucose-ferment	no	85.238	no

Availability in culture collections External links

[Ref.: #43021]

Culture collection no.

DSM 101509, JCM 31063

[Ref.: #96690]

SI-ID 405030

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paradesulfovibrio onnuriensis gen. nov., sp. nov., a chemolithoautotrophic sulfate-reducing bacterium isolated from the Onnuri vent field of the Indian Ocean and reclassification of Desulfovibrio senegalensis as Paradesulfovibrio senegalensis comb. nov.	Kim YJ, Yang JA, Lim JK, Park MJ, Yang SH, Lee HS, Kang SG, Lee JH, Kwon KK	J Microbiol	10.1007/s12275-020-9376-0	2020	*
Phylogeny	Desulfovibrio senegalensis sp. nov., a mesophilic sulfate reducer isolated from marine sediment.	Thioye A, Gam ZBA, Mbengue M, Cayol JL, Joseph-Bartoli M, Toure-Kane C, Labat M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001997	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43021

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101509

#43904

Abdoulaye Thioye, Zouhaier Ben Ali Gam, Malick Mbengue, Jean Luc Cayol, Manon Joseph-Bartoli, Coumba Touré-Kane, Marc Labat: Desulfovibrio senegalensis sp. nov., a mesophilic sulfate reducer isolated from marine sediment. IJSEM 67: 3162 - 3166 2017 ( DOI 10.1099/ijsem.0.001997 , PubMed 28867000 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96690

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405030.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pseudodesulfovibrio senegalensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Desulfovibrio senegalensis strain DSM 101509

Desulfovibrio senegalensis strain DSM 101509

Change proposal

Change proposal