Name: Cycloclasticus sp. TK-8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140388

Type strain:

Species: Cycloclasticus sp.

Strain Designation: TK-8

Culture col. no.: DSM 27168

Strain history: <- T. Gutierrez, Heriot Watt Univ., Edinburgh, UK; TK-8 <- T. Gutierrez, Univ. North Carolina at Chapel Hill, USA

NCBI tax ID(s): 1884353 (species)

SI-ID 406156

DSM 27168

Section

Cycloclasticus sp. TK-8 is a psychrophilic, motile bacterium that was isolated from deepwater Horizon oil-spill.

motile
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Cycloclasticus*
	Full Scientific Name (LPSN)	Cycloclasticus Dyksterhouse et al. 1995

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %94.754

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42995]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #42995]

Culture medium growth

[Ref.: #42995]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42995]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42995]			growth	20 °C

[Ref.: #42995]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42995]	Sample type/isolated from	deepwater Horizon oil-spill
[Ref.: #42995]	Geographic location (country and/or sea, region)	Gulf of Mexico
[Ref.: #42995]	Country	USA
[Ref.: #42995]	Country ISO 3 Code	USA
[Ref.: #42995]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC161584 (>99% sequence identity) for Cycloclasticus from Microbeatlas

Aquatic Samples	5401
Soil Samples	216
Animal Samples	383
Plant Samples	29
Total Samples	6029

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42995]	Cycloclasticus sp. TK-8 16S ribosomal RNA gene, partial sequence	KC161584	1401	ENA	1276891 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cycloclasticus pugetii DSM 27168	GCA_900142045	contig	GenBank	34068 tax ID	*
[Ref.: #66792]	Cycloclasticus sp. DSM 27168	1884353.3	wgs	PATRIC	1884353 tax ID	*
[Ref.: #66792]	Cycloclasticus sp. DSM 27168	2695421048	draft	JGI IMG/M	1884353 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cycloclasticus sp. DSM 27168 PATRIC: 1884353.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cycloclasticus sp. DSM 27168 PATRIC: 1884353.3
[Ref.: #69480]	motile	yes	80.379	no
[Ref.: #69480]	gram-positive	no	99.409	no
[Ref.: #69480]	anaerobic	no	96.74	no
[Ref.: #69480]	aerobic	yes	67.247	no
[Ref.: #69480]	halophile	yes	51.917	no
[Ref.: #69480]	spore-forming	no	95.492	no
[Ref.: #69480]	glucose-util	no	66.021	no
[Ref.: #69480]	flagellated	no	53.586	no
[Ref.: #69480]	thermophile	no	97.014	no
[Ref.: #69480]	glucose-ferment	no	93.406	no

Availability in culture collections External links

[Ref.: #42995]

Culture collection no.

DSM 27168

[Ref.: #96676]

SI-ID 406156

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42995

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27168

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96676

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406156.1 )

* These data were automatically processed and therefore are not curated

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Cycloclasticus sp. DSM 27168

Cycloclasticus sp. DSM 27168

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