Actinomyces gaoshouyii (DSM 104049, CGMCC 4.7372, pika_113)

Name: Actinomyces gaoshouyii (DSM 104049, CGMCC 4.7372, pika_113)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140372

Type strain

Strain Designation pika_113

Culture col. no. DSM 104049 CGMCC 4.7372 pika_113

NCBI tax ID(s) 1960083

Special Collections DSMZ Literature strains

History DSMZ <- X. Meng, Chinese Center for Disease Control and Prevention, Beijing, China; pika_113

Links

Actinomyces gaoshouyii pika_113 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from intestinal contents of plateau pika .

Gram-positive rod-shaped colony-forming facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399218

DSM 104049

@ref 20215

Last LPSN update 2026-05-29 08:39:42

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Actinomycetales

Family Actinomycetaceae

Genus Actinomyces

Species Actinomyces gaoshouyii

Full scientific name Actinomyces gaoshouyii Meng et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
43895	positive	1.1-1.6 µm	0.4-0.6 µm	rod-shaped
125438					92.875
125438	positive				92.004
125439	positive				96.601

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43895	<1 mm	greyish white	circular	1 day	Columbia blood agar

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
43895	Brain heart infusion
43895	Columbia blood agar
42979	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
42979	BBL ACTINOMYCES BROTH (DSMZ Medium 1029)	Medium recipe at MediaDive	Name: BBL ACTINOMYCES BROTH (DSMZ Medium 1029) Composition: Infusion Broth 1.425 g/l Potassium Phosphate 0.855 g/l Dextrose 0.285 g/l Yeast extract 0.285 g/l Pancreatic digest of casein 0.228 g/l L-Cysteine HCl 0.057 g/l Starch 0.057 g/l Ammonium Sulfate 0.057 g/l Magnesium sulfate 0.0114 g/l Calcium Chloride 0.00057 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42979	positive	growth	37
43895	positive	optimum	30

Culture pH

@ref	Ability	Type	PH
43895	positive	optimum	6.0-7.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43895	facultative anaerobe
125439	facultative anaerobe	97.714

Spore formation

43895

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43895	NaCl	positive	optimum	1 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43895	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
43895	58143 ChEBI	5-dehydro-D-gluconate	+	builds acid from
43895	27613 ChEBI	amygdalin	+	builds acid from
43895	18305 ChEBI	arbutin	+	builds acid from
43895	17057 ChEBI	cellobiose	+	builds acid from
43895	17108 ChEBI	D-arabinose	-	builds acid from
43895	18333 ChEBI	D-arabitol	+	builds acid from
43895	15824 ChEBI	D-fructose	+	builds acid from
43895	28847 ChEBI	D-fucose	-	builds acid from
43895	12936 ChEBI	D-galactose	+	builds acid from
43895	17634 ChEBI	D-glucose	+	builds acid from
43895	62318 ChEBI	D-lyxose	-	builds acid from
43895	16899 ChEBI	D-mannitol	+	builds acid from
43895	16024 ChEBI	D-mannose	+	builds acid from
43895	16988 ChEBI	D-ribose	+	builds acid from
43895	17924 ChEBI	D-sorbitol	-	builds acid from
43895	16443 ChEBI	D-tagatose	-	builds acid from
43895	65327 ChEBI	D-xylose	-	builds acid from
43895	17113 ChEBI	erythritol	-	builds acid from
43895	4853 ChEBI	esculin	+	builds acid from
43895	16813 ChEBI	galactitol	-	builds acid from
43895	5291 ChEBI	gelatin	-	hydrolysis
43895	28066 ChEBI	gentiobiose	+	builds acid from
43895	17754 ChEBI	glycerol	+	builds acid from
43895	28087 ChEBI	glycogen	-	builds acid from
43895	606565 ChEBI	hippurate	+	hydrolysis
43895	15443 ChEBI	inulin	+	builds acid from
43895	30849 ChEBI	L-arabinose	-	builds acid from
43895	18403 ChEBI	L-arabitol	-	builds acid from
43895	18287 ChEBI	L-fucose	-	builds acid from
43895	62345 ChEBI	L-rhamnose	-	builds acid from
43895	17266 ChEBI	L-sorbose	-	builds acid from
43895	17716 ChEBI	lactose	-	builds acid from
43895	17306 ChEBI	maltose	+	builds acid from
43895	28053 ChEBI	melibiose	+	builds acid from
43895	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
43895	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43895	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43895	17268 ChEBI	myo-inositol	+	builds acid from
43895	506227 ChEBI	N-acetylglucosamine	-	builds acid from
43895	17632 ChEBI	nitrate	+	reduction
43895	32032 ChEBI	potassium gluconate	-	builds acid from
43895	16634 ChEBI	raffinose	+	builds acid from
43895	15963 ChEBI	ribitol	-	builds acid from
43895	17814 ChEBI	salicin	+	builds acid from
43895	28017 ChEBI	starch	+	builds acid from
43895	17992 ChEBI	sucrose	+	builds acid from
43895	27082 ChEBI	trehalose	+	builds acid from
43895	32528 ChEBI	turanose	+	builds acid from
43895	17151 ChEBI	xylitol	-	builds acid from

Enzymes

@ref	Value	Activity	Ec
43895	acid phosphatase	+	3.1.3.2
43895	alkaline phosphatase	+	3.1.3.1
43895	alpha-chymotrypsin	-	3.4.21.1
43895	alpha-fucosidase	-	3.2.1.51
43895	alpha-galactosidase	+	3.2.1.22
43895	alpha-glucosidase	+	3.2.1.20
43895	alpha-mannosidase	-	3.2.1.24
43895	arginine dihydrolase	-	3.5.3.6
43895	beta-galactosidase	+	3.2.1.23
43895	beta-glucosidase	+	3.2.1.21
43895	beta-glucuronidase	-	3.2.1.31
43895	catalase	-	1.11.1.6
43895	cystine arylamidase	+	3.4.11.3
43895	esterase (C 4)	+
43895	esterase Lipase (C 8)	-
43895	glycyl tryptophan arylamidase	-
43895	leucine arylamidase	+	3.4.11.1
43895	lipase (C 14)	-
43895	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43895	naphthol-AS-BI-phosphohydrolase	+
43895	pyrazinamidase	+	3.5.1.B15
43895	pyroglutamic acid arylamidase	-
43895	pyrrolidonyl arylamidase	-	3.4.19.3
43895	trypsin	-	3.4.21.4
43895	urease	-	3.5.1.5
43895	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Caecal content
#Host	#Mammals	-
#Host Body Product	#Gastrointestinal tract	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Host species
42979	intestinal contents of plateau pika (Ochotona curzoniae)	Tibet-Qinghai Plateau	China	CHN	Asia			Ochotona curzoniae
43895	intestinal contents of plateau pika (Ochotona curzoniae), Tibet-Qinghai Plateau, China	Tibet-Qinghai Plateau	China	CHN	Asia	Columbia-5% sheep blood agar	1 day

Taxonmaps

69479

Global distribution of 16S sequence KY611802 (>99% sequence identity) for Actinomyces from Microbeatlas

Aquatic Samples	84
Soil Samples	33
Animal Samples	5344
Plant Samples	10
Total Samples	5471

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42979	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464649v1 assembly for Actinomyces gaoshouyii CGMCC 4.7372	scaffold	GCA_014646495	1960083.5	8112848464	1960083	76.9
66792	ASM207217v1 assembly for Actinomyces gaoshouyii pika_113	scaffold	GCA_002072175	1960083.3	8118175678	1960083	75.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42979	Actinomyces gaoshouyii 16S ribosomal RNA gene, partial sequence	KY611802	1466		1960083

GC content

@ref	GC-content (mol%)	Method
43895	71	genome sequence analysis
42979	71	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1464649v1 assembly for Actinomyces gaoshouyii CGMCC 4.7372
BV-BRC: 1960083.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	96.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	97.71	no
125439	motility	BacteriaNetⓘ	no	83.50	no
125439	spore_formation	BacteriaNetⓘ	yes	46.61	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinomyces gaoshouyii CGMCC 4.7372
NCBI: GCA_014646495.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.00	yes
125438	anaerobic	anaerobicⓘ	no	79.05	yes
125438	aerobic	aerobicⓘ	no	81.14	no
125438	spore-forming	spore-formingⓘ	no	84.49	yes
125438	thermophilic	thermophileⓘ	no	93.20	yes
125438	flagellated	motile2+ⓘ	no	92.88	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomyces gaoshouyii sp. nov., isolated from plateau pika (Ochotona curzoniae).	Meng X, Wang Y, Lu S, Lai XH, Jin D, Yang J, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002119	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42979	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104049
#43895	Xiangli Meng, Yiting Wang, Shan Lu, Xin-He Lai, Dong Jin, Jing Yang, Jianguo Xu: Actinomyces gaoshouyii sp. nov., isolated from plateau pika (Ochotona curzoniae). IJSEM 67: 3363 - 3368 2017 ( DOI 10.1099/ijsem.0.002119 , PubMed 28857023 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomyces gaoshouyii (DSM 104049, CGMCC 4.7372, pika_113)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014646495

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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