Name: Mycobacterium aquaticum RW6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140371

Type strain:

Species: Mycobacterium aquaticum

Strain Designation: RW6

Culture col. no.: DSM 104277, CIP 111198

Strain history: <- E. Tortoli, San Raffaele Scientific Institute, Milan, Italy; RW6 <- A.H. Shahraki; Pasture Institute of Iran, Dep. of Epidemiology, Teheran; RW6

NCBI tax ID(s): 1927124 (species)

SI-ID 405367

DSM 104277

Section

Mycobacterium aquaticum RW6 is a mesophilic human pathogen that was isolated from hospital haemodialysis water.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium aquaticum**
	Full Scientific Name (LPSN)	Mycobacterium aquaticum Hashemi Shahraki et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43892]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.829

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Colony color

unpigmented

Multimedia content

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Caption:

Medium 645 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Blood agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Middelbrook 7H10

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Culture medium growth

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Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #42978]		growth	37 °C
[Ref.: #43892]		growth	25 °C
[Ref.: #43892]		growth	37 °C
[Ref.: #43892]	no	growth	42 °C

[Ref.: #42978]	Temperature range	mesophilic
[Ref.: #43892]	Temperature range	mesophilic
[Ref.: #43892]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43892]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.77

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43892]		tellurite ChEBI	+	reduction
[Ref.: #43892]		tween 80 ChEBI	-	hydrolysis

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #43892]	amikacin ChEBI	yes
[Ref.: #43892]	ciprofloxacin ChEBI	yes
[Ref.: #43892]	clarithromycin ChEBI	yes
[Ref.: #43892]	imipenem ChEBI		yes
[Ref.: #43892]	linezolid ChEBI	yes
[Ref.: #43892]	moxifloxacin ChEBI	yes
[Ref.: #43892]	tobramycin ChEBI		yes

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity
[Ref.: #43892]		26	sulfamethoxazole ChEBI	yes
[Ref.: #43892]		26	trimethoprim ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43892]	catalase	+	1.11.1.6
[Ref.: #43892]	nitrate reductase	-	1.7.99.4
[Ref.: #43892]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42978]	Sample type/isolated from	hospital haemodialysis water
[Ref.: #42978]	Geographic location (country and/or sea, region)	Ahvaz hospital
[Ref.: #42978]	Country	Iran
[Ref.: #42978]	Country ISO 3 Code	IRN
[Ref.: #42978]	Continent	Asia

[Ref.: #43892]	Sample type/isolated from	haemodialysis water from Iranian general hospital, Ahwaz, Khuzestan province
[Ref.: #43892]	Geographic location (country and/or sea, region)	Ahwaz, Khuzestan province
[Ref.: #43892]	Country	Iran
[Ref.: #43892]	Country ISO 3 Code	IRN
[Ref.: #43892]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	#Medical environment	#Clinic
#Environmental	#Aquatic	-
#Infection	#Medical device	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42978]	Pathogenicity (human)	yes, in single cases
[Ref.: #42978]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42978]	Mycobacterium aquaticum 16S ribosomal RNA gene, partial sequence	KY392537	1518	ENA	1927124 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium aquaticum RW6	GCA_002086485	contig	GenBank	1927124 tax ID	*
[Ref.: #66792]	Mycobacterium sp. RW6 strain RW6	1927124.3	wgs	PATRIC	1927124 tax ID	*
[Ref.: #66792]	Mycobacterium aquaticum RW6	2865512620	draft	JGI IMG/M	1927124 tax ID	*

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GC-content

66.48 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium sp. RW6 strain RW6 PATRIC: 1927124.3
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium sp. RW6 strain RW6 PATRIC: 1927124.3
[Ref.: #69480]	motile	no	93.32	yes
[Ref.: #69480]	gram-positive	yes	87.047	no
[Ref.: #69480]	anaerobic	no	98.853	no
[Ref.: #69480]	aerobic	yes	88.759	no
[Ref.: #69480]	halophile	no	96.129	no
[Ref.: #69480]	spore-forming	no	82.445	yes
[Ref.: #69480]	glucose-util	yes	89.853	no
[Ref.: #69480]	flagellated	no	98.037	no
[Ref.: #69480]	thermophile	no	99.57	no
[Ref.: #69480]	glucose-ferment	no	90.163	no

Availability in culture collections External links

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Culture collection no.

DSM 104277, CIP 111198

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SI-ID 405367

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium aquaticum sp. nov., a rapidly growing species isolated from haemodialysis water.	Hashemi Shahraki A, Trovato A, Droz S, Haidarieh P, Borroni E, Mirsaeidi M, Mannino R, Hashemzadeh M, Mariottini A, Cirillo DM, Tortoli E	Int J Syst Evol Microbiol	10.1099/ijsem.0.002103	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42978

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104277

#43892

Abdolrazagh Hashemi Shahraki, Alberto Trovato, Sara Droz, Parvin Haidarieh, Emanuele Borroni, Mehdi Mirsaeidi, Roberta Mannino, Mohamad Hashemzadeh, Alessandro Mariottini, Daniela Maria Cirillo, Enrico Tortoli: Mycobacterium aquaticum sp. nov., a rapidly growing species isolated from haemodialysis water. IJSEM 67: 3279 - 3282 2017 ( DOI 10.1099/ijsem.0.002103 , PubMed 28829035 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96669

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405367.1 )

* These data were automatically processed and therefore are not curated

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Mycobacterium sp. RW6 strain RW6

Mycobacterium sp. RW6 strain RW6

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