Saccharospirillum impatiens EL-105 | Type strain | DSM 12546, CECT 5721, UCCCB5 | BacDiveID:14037

Strain identifier

BacDive ID: 14037

Type strain:

Species: Saccharospirillum impatiens

Strain Designation: EL-105

Culture col. no.: DSM 12546, CECT 5721, UCCCB5

Strain history: Labrenz M.< Hirsch, P. Institut fur Allgemeine Mikrobiologie

NCBI tax ID(s): 1123228 (strain), 169438 (species)

SI-ID 100941

CECT 5721, DSM 12546

Other strains from Saccharospirillum impatiens

S. impatiens EL-166, DSM 12548

Section

Saccharospirillum impatiens EL-105 is a psychrophilic, motile bacterium that was isolated from water sediment.

motile
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Saccharospirillaceae*
	Genus	*Saccharospirillum*
	Species	**Saccharospirillum impatiens**
	Full Scientific Name (LPSN)	Saccharospirillum impatiens Labrenz et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.927

[Ref.: #69480]	Motility	yes Confidence in %92.824

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4761]			growth	20 °C
[Ref.: #67772]			optimum	16-33 °C

Temperature range

psychrophilic

	pH	Kind of pH		pH
[Ref.: #67772]			maximum	8.6
[Ref.: #67772]			minimum	6.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.987

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4761]	Sample type/isolated from	water sediment
[Ref.: #4761]	Geographic location (country and/or sea, region)	Ekho Lake, Vestfold Hills
[Ref.: #4761]	Continent	Australia and Oceania

[Ref.: #67772]	Sample type/isolated from	Water sediment
[Ref.: #67772]	Sampling date	1998
[Ref.: #67772]	Geographic location (country and/or sea, region)	Ekho Lake
[Ref.: #67772]	Country	Antarctica
[Ref.: #67772]	Country ISO 3 Code	ATA
[Ref.: #67772]	Continent	Australia and Oceania
[Ref.: #67772]	Geographic location	-68.5211°/78.2700°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Sediment

What are isolation sources categories?

Global distribution of 16S sequence AJ315983 (>99% sequence identity) for Saccharospirillum from Microbeatlas

Aquatic Samples	698
Soil Samples	152
Animal Samples	280
Plant Samples	39
Total Samples	1169

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4761]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4761]	Saccharospirillum impatiens partial 16S rRNA gene, type strain EL-105T	AJ315983	1478	ENA	169438 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharospirillum impatiens DSM 12546	GCA_000423605	scaffold	GenBank	1123228 tax ID	*
[Ref.: #66792]	Saccharospirillum impatiens DSM 12546	1123228.4	wgs	PATRIC	1123228 tax ID	*
[Ref.: #66792]	Saccharospirillum impatiens DSM 12546	2524614672	draft	JGI IMG/M	1123228 tax ID	*

GC-content

53.7-55.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: NCBI: GCA_000423605.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharospirillum impatiens DSM 12546 DSM 12546 NCBI: GCA_000423605.1
[Ref.: #69480]	motile	yes	89.551	no
[Ref.: #69480]	flagellated	yes	88.124	no
[Ref.: #69480]	gram-positive	no	98.3	no
[Ref.: #69480]	anaerobic	no	98.327	no
[Ref.: #69480]	aerobic	yes	95.953	no
[Ref.: #69480]	halophile	yes	55.253	no
[Ref.: #69480]	spore-forming	no	95.383	no
[Ref.: #69480]	thermophile	no	97.661	yes
[Ref.: #69480]	glucose-util	yes	91.13	no
[Ref.: #69480]	glucose-ferment	no	90.63	no

Availability in culture collections External links

Culture collection no.

DSM 12546, CECT 5721, UCCCB5

SI-ID 100941

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharospirillum alexandrii sp. nov., isolated from the toxigenic marine dinoflagellate Alexandrium catenella LZT09.	Yang Q, Jiang Z, Zhou X, Xie Z, Wang Y, Wang D, Feng L, Yang G, Ge Y, Zhang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003832	2020	*
Phylogeny	Saccharospirillum mangrovi sp. nov., a bacterium isolated from mangrove sediment.	Zhang W, Yuan Y, Su D, Ding L, Yan X, Wu M, Epstein SS, He S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002899	2018	*
Phylogeny	Saccharospirillum correiae sp. nov., an endophytic bacterium isolated from the halophyte Halimione portulacoides.	Fidalgo C, Rocha J, Proenca DN, Morais PV, Alves A, Henriques I	Int J Syst Evol Microbiol	10.1099/ijsem.0.001914	2017	*
Phylogeny	Saccharospirillum salsuginis sp. nov., a gammaproteobacterium from a subterranean brine.	Chen YG, Cui XL, Li QY, Wang YX, Tang SK, Liu ZX, Wen ML, Peng Q, Xu LH	Int J Syst Evol Microbiol	10.1099/ijs.0.003616-0	2009	*
Phylogeny	Saccharospirillum impatiens gen. nov., sp. nov., a novel gamma-Proteobacterium isolated from hypersaline Ekho Lake (East Antarctica).	Labrenz M, Lawson PA, Tindall BJ, Collins MD, Hirsch P	Int J Syst Evol Microbiol	10.1099/ijs.0.02406-0	2003	*

References

#4761

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12546

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83204

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100941.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.