Name: Mycobacterium eburneum X82
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140369

Type strain:

Species: Mycobacterium eburneum

Strain Designation: X82

Culture col. no.: DSM 44358, CECT 8775

Strain history: <- L. Naumann, Univ. Regensburg, Germany; X82 <- Zentralkrankenhaus Gauting, Germany

NCBI tax ID(s): 2035343 (species)

SI-ID 404303

DSM 44358

Section

Mycobacterium eburneum X82 is an aerobe, mesophilic, Gram-positive human pathogen that was isolated from sputum.

Gram-positive
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium eburneum**
	Full Scientific Name (LPSN)	Mycobacterium eburneum Nouioui et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43890]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43890]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.024

[Ref.: #43890]	Colony color	ivory coloured colonies
[Ref.: #43890]	Incubation period	7 days
[Ref.: #43890]	Cultivation medium used	Middelbrock 7H10

[Ref.: #43890]	Colony color	ivory coloured colonies
[Ref.: #43890]	Incubation period	7 days
[Ref.: #43890]	Cultivation medium used	Peptone-meat extract-glycerol agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Glucose-yeast-malt extract agar

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Culture medium growth

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Culture medium

Lowstein-Jensen agar

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Culture medium growth

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Culture medium

Middelbrock 7H10 agar

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Peptone-meat extract-glycerol

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Culture medium growth

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Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

LÖWENSTEIN-JENSEN MEDIUM (DSMZ Medium 354)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #42976]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #42976]	growth	37 °C
[Ref.: #43890]	growth	28-37 °C
[Ref.: #43890]	optimum	37 °C

[Ref.: #42976]	Temperature range	mesophilic
[Ref.: #43890]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43890]			optimum	7
[Ref.: #43890]			growth	7.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43890]

Oxygen tolerance

aerobe

[Ref.: #43890]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.671

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Observation

quinone MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43890]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #43890]	acetoacetate ChEBI	-	carbon source
[Ref.: #43890]	cellobiose ChEBI	+	carbon source
[Ref.: #43890]	citrate ChEBI	-	carbon source
[Ref.: #43890]	D-fructose ChEBI	+	carbon source
[Ref.: #43890]	D-fucose ChEBI	+	carbon source
[Ref.: #43890]	D-galactose ChEBI	+	carbon source
[Ref.: #43890]	D-gluconate ChEBI	+	carbon source
[Ref.: #43890]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #43890]	D-glucuronate ChEBI	+	carbon source
[Ref.: #43890]	D-malate ChEBI	-	carbon source
[Ref.: #43890]	D-saccharate ChEBI	+	carbon source
[Ref.: #43890]	D-serine ChEBI	-	carbon source
[Ref.: #43890]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43890]	dextrin ChEBI	-	carbon source
[Ref.: #43890]	galactarate ChEBI	-	carbon source
[Ref.: #43890]	glucuronamide ChEBI	-	carbon source
[Ref.: #43890]	L-alanine ChEBI	+	carbon source
[Ref.: #43890]	L-fucose ChEBI	+	carbon source
[Ref.: #43890]	L-glutamate ChEBI	+	carbon source
[Ref.: #43890]	L-malate ChEBI	-	carbon source
[Ref.: #43890]	maltose ChEBI	+	carbon source
[Ref.: #43890]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #43890]	myo-inositol ChEBI	+	carbon source
[Ref.: #43890]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43890]	nitrate ChEBI	-	reduction
[Ref.: #43890]	raffinose ChEBI	-	carbon source
[Ref.: #43890]	stachyose ChEBI	+	carbon source
[Ref.: #43890]	sucrose ChEBI	+	carbon source
[Ref.: #43890]	turanose ChEBI	+	carbon source
[Ref.: #43890]	tween 80 ChEBI	+	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #43890]	amikacin ChEBI		yes
[Ref.: #43890]	amoxicillin ChEBI	yes
[Ref.: #43890]	carbenicillin ChEBI		yes
[Ref.: #43890]	cefazolin ChEBI	yes
[Ref.: #43890]	ceftriaxone ChEBI	yes
[Ref.: #43890]	cephalothin ChEBI		yes
[Ref.: #43890]	chlortetracyclin ChEBI		yes
[Ref.: #43890]	enoxacin ChEBI	yes
[Ref.: #43890]	fusidate ChEBI	yes
[Ref.: #43890]	gentamicin ChEBI	yes
[Ref.: #43890]	guanidinium chloride ChEBI	yes
[Ref.: #43890]	lincomycin ChEBI	yes
[Ref.: #43890]	lithium chloride ChEBI	yes
[Ref.: #43890]	lomefloxacin ChEBI	yes
[Ref.: #43890]	minocycline ChEBI	yes
[Ref.: #43890]	nalidixic acid ChEBI	yes
[Ref.: #43890]	neomycin ChEBI	yes
[Ref.: #43890]	niaproof ChEBI	yes
[Ref.: #43890]	polymyxin b ChEBI	yes
[Ref.: #43890]	potassium tellurite ChEBI		yes
[Ref.: #43890]	sodium bromate ChEBI		yes
[Ref.: #43890]	sodium chloride ChEBI		yes
[Ref.: #43890]	sodium formate ChEBI	yes
[Ref.: #43890]	spectinomycin ChEBI	yes
[Ref.: #43890]	spiramycin ChEBI		yes
[Ref.: #43890]	sulfamethoxazole ChEBI	yes
[Ref.: #43890]	sulfathiazole ChEBI	yes
[Ref.: #43890]	tetracycline ChEBI		yes
[Ref.: #43890]	tetrazolium blue ChEBI	yes
[Ref.: #43890]	tobramycin ChEBI		yes
[Ref.: #43890]	troleandomycin ChEBI	yes
[Ref.: #43890]	vancomycin ChEBI	yes
[Ref.: #43890]	vibriostat ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43890]	acid phosphatase	+	3.1.3.2
[Ref.: #43890]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43890]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43890]	arylsulfatase	+	3.1.6.1
[Ref.: #43890]	beta-glucosidase	+	3.2.1.21
[Ref.: #43890]	catalase	+	1.11.1.6
[Ref.: #43890]	esterase (C 4)	+
[Ref.: #43890]	esterase Lipase (C 8)	+
[Ref.: #43890]	leucine arylamidase	+	3.4.11.1
[Ref.: #43890]	lipase (C 14)	+
[Ref.: #43890]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43890]	urease	+	3.5.1.5
[Ref.: #43890]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42976]	Sample type/isolated from	sputum
[Ref.: #42976]	Geographic location (country and/or sea, region)	Bavaria
[Ref.: #42976]	Country	Switzerland
[Ref.: #42976]	Country ISO 3 Code	CHE
[Ref.: #42976]	Continent	Europe

[Ref.: #43890]	Sample type/isolated from	sputum specimen collected in Switzerland in 1998
[Ref.: #43890]	Sampling date	1998
[Ref.: #43890]	Country	Switzerland
[Ref.: #43890]	Country ISO 3 Code	CHE
[Ref.: #43890]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Sputum
#Infection	#Patient	#Specimen

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42976]	Pathogenicity (human)	yes, in single cases
[Ref.: #42976]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42976]	Mycobacterium eburneum 16S ribosomal RNA gene, partial sequence	KX879093	1394	ENA	2035343 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium eburneum strain DSM 44358	2035343.3	wgs	PATRIC	2035343 tax ID	*

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GC-content

68.7 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium eburneum strain DSM 44358 PATRIC: 2035343.3
[Ref.: #69481]	spore-forming	no	68	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium eburneum strain DSM 44358 PATRIC: 2035343.3
[Ref.: #69480]	motile	no	95.923	yes
[Ref.: #69480]	gram-positive	yes	90.403	no
[Ref.: #69480]	anaerobic	no	99.409	yes
[Ref.: #69480]	aerobic	yes	90.274	no
[Ref.: #69480]	halophile	no	91.118	no
[Ref.: #69480]	spore-forming	no	82.392	yes
[Ref.: #69480]	glucose-util	yes	70.128	no
[Ref.: #69480]	flagellated	no	98.562	yes
[Ref.: #69480]	thermophile	no	98.181	yes
[Ref.: #69480]	glucose-ferment	no	88.618	no

Availability in culture collections External links

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Culture collection no.

DSM 44358, CECT 8775

[Ref.: #96667]

SI-ID 404303

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium eburneum sp. nov., a non-chromogenic, fast-growing strain isolated from sputum.	Nouioui I, Carro L, Teramoto K, Igual JM, Jando M, Del Carmen Montero-Calasanz M, Sutcliffe I, Sangal V, Goodfellow M, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijsem.0.002033	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42976

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44358

#43890

Imen Nouioui, Lorena Carro, Kanae Teramoto, José M. Igual, Marlen Jando, Maria del Carmen Montero-Calasanz, Iain Sutcliffe, Vartul Sangal, Michael Goodfellow, Hans-Peter Klenk: Mycobacterium eburneum sp. nov., a non-chromogenic, fast-growing strain isolated from sputum. IJSEM 67: 3174 - 3181 2017 ( DOI 10.1099/ijsem.0.002033 , PubMed 28869002 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96667

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404303.1 )

* These data were automatically processed and therefore are not curated

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Mycobacterium eburneum strain DSM 44358

Mycobacterium eburneum strain DSM 44358

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