Neptuniibacter marinus (DSM 100783, CECT 8938, ATR 1.1)

Name: Neptuniibacter marinus (DSM 100783, CECT 8938, ATR 1.1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140367

Type strain

Culture col. no. DSM 100783 CECT 8938 ATR 1.1

NCBI tax ID(s) 1806670

Special Collections DSMZ

History DSMZ <- A. López Diéguez, University of Santiago de Compostela, Spain; ATR 1.1

Links

Neptuniibacter marinus DSM 100783 is a bacterium that was isolated from seawater of a tank in a hatchery of Great scallop .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400144

CECT 8938,DSM 100783

@ref 20215

Last LPSN update 2026-05-29 08:39:42

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Oceanospirillaceae

Genus Neptuniibacter

Species Neptuniibacter marinus

Full scientific name Neptuniibacter marinus Diéguez et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42974	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42974	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	92.583

Spore formation

@ref	Spore formation	Confidence
125439		99.94

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Container (Reservoir)
#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
42974	seawater of a tank in a hatchery of Great scallop (Pecten maximus)	Pecten maximus	Bergen (60° 30' 53.77'' N 4° 54' 14.75'' W)	Norway	NOR	Europe	60.5149	-4.9041 60.5149/-4.9041

Taxonmaps

69479

Global distribution of 16S sequence LT549013 (>99% sequence identity) for Neptuniibacter from Microbeatlas

Aquatic Samples	379
Soil Samples	23
Animal Samples	53
Plant Samples	2
Total Samples	457

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42974	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM159772v1 assembly for Neptuniibacter marinus ATR 1.1	contig	GCA_001597725	1806670.3	2724679210	1806670	55.32

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42974	Neptuniibacter sp. CECT 8938 partial 16S rRNA gene, type strain CECT 8938T	LT549013	1317		1806670

GC content

@ref	GC-content (mol%)	Method
42974	42.8	fluorimetric

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM159772v1 assembly for Neptuniibacter marinus ATR 1.1
NCBI: GCA_001597725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.58	no
125439	gram_stain	BacteriaNetⓘ	negative	98.90	no
125439	motility	BacteriaNetⓘ	yes	68.15	no
125439	spore_formation	BacteriaNetⓘ	no	99.94	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	List of new names and new combinations previously effectively, but not validly, published.	Oren A, Garrity GM.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002278	2017
	Genome taxonomy of the genus Neptuniibacter and proposal of Neptuniibacter victor sp. nov. isolated from sea cucumber larvae.	Kudo R, Yamano R, Yu J, Koike S, Haditomo AHC, de Freitas MAM, Tsuchiya J, Mino S, Thompson F, Romalde JL, Kasai H, Sakai Y, Sawabe T.	PLoS One	10.1371/journal.pone.0290060	2023
Phylogeny	Neptuniibacter pectenicola sp. nov. and Neptuniibacter marinus sp. nov., two novel species isolated from a Great scallop (Pecten maximus) hatchery in Norway and emended description of the genus Neptuniibacter.	Dieguez AL, Balboa S, Magnesen T, Romalde JL	Syst Appl Microbiol	10.1016/j.syapm.2016.12.002	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42974	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100783
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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About us

Neptuniibacter marinus (DSM 100783, CECT 8938, ATR 1.1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001597725

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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