Kribbella sindirgiensis (DSM 27082, KCTC 29220, FSN23)

Name: Kribbella sindirgiensis (DSM 27082, KCTC 29220, FSN23)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140362

Type strain

Strain Designation FSN23

Culture col. no. DSM 27082 KCTC 29220 FSN23

NCBI tax ID(s) 1124744

Special Collections DSMZ KCTC

History DSMZ <- F. Ozdemir Kocak, Bilecik Seyh Edebali Univ., Turkey; FSN23 <- F. Ozdemir Kocak, Ondokuz Mayis Univ., Turkey KCTC <- Fadime Ozdemir Kocak,Seyh Edebali Univ.,Turkey

Links

Kribbella sindirgiensis FSN23 is an aerobe bacterium that was isolated from soil.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400342

KCTC 29220,DSM 27082

@ref 20215

Last LPSN update 2026-05-29 08:39:42

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Kribbellaceae

Genus Kribbella

Species Kribbella sindirgiensis

Full scientific name Kribbella sindirgiensis Ozdemir-Kocak et al. 2018

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		90.993
125439		97.596	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42969	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
42969	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42969	positive	growth	28
67771	positive	growth	28-30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	97.883

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
42969	soil	Balikesir, Sindirgi dam lake (39° 14' 49.40'' N, 28° 12' 40.99'' E)	Turkey	TUR	Asia	39.2471	28.2114 39.2471/28.2114
67771	From soil sample which was collected from Caygoren Dam lakeside located in SÄ±ndÄ±rgÄ±		Turkey	TUR	Asia

Taxonmaps

69479

Global distribution of 16S sequence JN896614 (>99% sequence identity) for Kribbella from Microbeatlas

Aquatic Samples	10
Soil Samples	122
Animal Samples	1
Plant Samples	15
Total Samples	148

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM433143v1 assembly for Kribbella sindirgiensis DSM 27082	contig	GCA_004331435	1124744.3	2894994769	1124744	64.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42969	Kribbella sindirgiensis strain FSN23 16S ribosomal RNA gene, partial sequence	JN896614	1452		1124744

GC content

@ref	GC-content (mol%)	Method
42969	68.28	fluorimetric

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM433143v1 assembly for Kribbella sindirgiensis DSM 27082
NCBI: GCA_004331435

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	97.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.88	no
125439	motility	BacteriaNetⓘ	no	90.99	no
125439	spore_formation	BacteriaNetⓘ	yes	76.44	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kribbella sindirgiensis strain DSM 27082
PATRIC: 1124744.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.35	no
125438	anaerobic	anaerobicⓘ	no	95.88	yes
125438	spore-forming	spore-formingⓘ	yes	83.01	no
125438	aerobic	aerobicⓘ	yes	84.51	yes
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	86.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kribbella sindirgiensis sp. nov. isolated from soil.	Ozdemir-Kocak F, Isik K, Saricaoglu S, Saygin H, Inan-Bektas K, Cetin D, Guven K, Sahin N	Arch Microbiol	10.1007/s00203-017-1414-x	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42969	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27082
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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About us

Kribbella sindirgiensis (DSM 27082, KCTC 29220, FSN23)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004331435

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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