Cytobacillus praedii (DSM 101002, CCTCC AB 2015208, FJAT-25547)

Name: Cytobacillus praedii (DSM 101002, CCTCC AB 2015208, FJAT-25547)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140355

Type strain

Strain Designation FJAT-25547

Culture col. no. DSM 101002 CCTCC AB 2015208 FJAT-25547

NCBI tax ID(s) 1742358

Special Collections DSMZ Literature strains

History <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-25547

Links

Cytobacillus praedii FJAT-25547 is an aerobe, spore-forming, Gram-positive prokaryote that forms circular colonies and was isolated from paddy soil.

spore-forming Gram-positive motile rod-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406154

DSM 101002

@ref 20215

Last LPSN update 2025-12-16 10:03:34

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Cytobacillaceae

Genus Cytobacillus

Species Cytobacillus praedii

Full scientific name Cytobacillus praedii (Liu et al. 2017) Patel and Gupta 2020

Synonyms (1)

Bacillus praedii

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43457	positive	2.1-4.3 µm	0.7-1.1 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43457	2-3 mm	light white to yellow	circular	2 days	Luria Bertani agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43457	LB (Luria-Bertani) MEDIUM
42962	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
42962	positive	growth	30	mesophilic
43457	positive	growth	15-40
43457	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43457	positive	optimum	9
43457	positive	growth	5-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

43457

Oxygen toleranceaerobe

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
43457	ellipsoidal at subterminal positions	endospore
125438				92.587

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43457	NaCl	positive	growth	0-10 %(w/v)
43457	NaCl	positive	optimum	4 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43457	58143 ChEBI	5-dehydro-D-gluconate	-	builds acid from
43457	27613 ChEBI	amygdalin	-	carbon source
43457	27613 ChEBI	amygdalin	-	nitrogen source
43457	22599 ChEBI	arabinose	-	carbon source
43457	22599 ChEBI	arabinose	-	nitrogen source
43457	17057 ChEBI	cellobiose	-	builds acid from
43457	16947 ChEBI	citrate	-	assimilation
43457	17108 ChEBI	D-arabinose	-	builds acid from
43457	28847 ChEBI	D-fucose	-	builds acid from
43457	65327 ChEBI	D-xylose	-	builds acid from
43457	4853 ChEBI	esculin	+	builds acid from
43457	28757 ChEBI	fructose	-	builds acid from
43457	5291 ChEBI	gelatin	+	hydrolysis
43457	17234 ChEBI	glucose	-	carbon source
43457	17234 ChEBI	glucose	-	nitrogen source
43457	17234 ChEBI	glucose	+	builds acid from
43457	17754 ChEBI	glycerol	+	builds acid from
43457	17306 ChEBI	maltose	-	builds acid from
43457	29864 ChEBI	mannitol	-	builds acid from
43457	37684 ChEBI	mannose	-	carbon source
43457	37684 ChEBI	mannose	-	nitrogen source
43457	6731 ChEBI	melezitose	-	carbon source
43457	6731 ChEBI	melezitose	-	nitrogen source
43457	17268 ChEBI	myo-inositol	-	carbon source
43457	17268 ChEBI	myo-inositol	-	nitrogen source
43457	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43457	17632 ChEBI	nitrate	+	reduction
43457	26546 ChEBI	rhamnose	-	carbon source
43457	26546 ChEBI	rhamnose	-	nitrogen source
43457	33942 ChEBI	ribose	+	builds acid from
43457	27922 ChEBI	sorbose	-	carbon source
43457	27922 ChEBI	sorbose	-	nitrogen source
43457	17992 ChEBI	sucrose	-	carbon source
43457	17992 ChEBI	sucrose	-	nitrogen source
43457	33954 ChEBI	tagatose	-	builds acid from
43457	16199 ChEBI	urea	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite
43457	15688 ChEBI	acetoin
43457	16136 ChEBI	hydrogen sulfide
43457	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
43457	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
43457	acid phosphatase	-	3.1.3.2
43457	alkaline phosphatase	+	3.1.3.1
43457	alpha-chymotrypsin	-	3.4.21.1
43457	alpha-fucosidase	-	3.2.1.51
43457	alpha-galactosidase	-	3.2.1.22
43457	alpha-glucosidase	+	3.2.1.20
43457	alpha-mannosidase	-	3.2.1.24
43457	arginine dihydrolase	-	3.5.3.6
43457	beta-galactosidase	-	3.2.1.23
43457	beta-glucosidase	-	3.2.1.21
43457	beta-glucuronidase	-	3.2.1.31
43457	catalase	+	1.11.1.6
43457	cystine arylamidase	-	3.4.11.3
43457	cytochrome oxidase	-	1.9.3.1
43457	esterase	+
43457	esterase Lipase (C 8)	+
43457	leucine arylamidase	-	3.4.11.1
43457	lipase (C 14)	-
43457	lysine decarboxylase	-	4.1.1.18
43457	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43457	naphthol-AS-BI-phosphohydrolase	-
43457	ornithine decarboxylase	-	4.1.1.17
43457	trypsin	-	3.4.21.4
43457	tryptophan deaminase	-	4.1.99.1
43457	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-
#Condition	#Humid	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
42962	paddy soil	Sichuan province, Yanting Prefecture, Linshan Township (31° 16' N 105° 27' E)	China	CHN	Asia	31.2667	105.45 31.2667/105.45
43457	purplish paddy soil	Linshan Township, Yanting Prefecture, Sichuan Province	China	CHN	Asia	31.266	105.45 31.266/105.45

Taxonmaps

69479

Global distribution of 16S sequence KY582959 (>99% sequence identity) for Bacillaceae from Microbeatlas

Aquatic Samples	80
Soil Samples	273
Animal Samples	120
Plant Samples	68
Total Samples	541

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42962	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM143960v1 assembly for Cytobacillus praedii FJAT-25547	scaffold	GCA_001439605	2744054486	1742358	50.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42962	Cytobacillus praedii strain FJAT-25547 16S ribosomal RNA gene, partial sequence	KY582959	1420		1742358

GC content

@ref	GC-content (mol%)	Method
43457	39.1
42962	39.1	sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cytobacillus praedii FJAT-25547
NCBI: GCA_001439605.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	71.04	no
125438	anaerobic	anaerobicⓘ	no	95.79	yes
125438	aerobic	aerobicⓘ	yes	68.02	yes
125438	spore-forming	spore-formingⓘ	yes	92.59	yes
125438	thermophilic	thermophileⓘ	no	92.64	yes
125438	flagellated	motile2+ⓘ	yes	80.53	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus dafuensis sp. Nov., Isolated from a Forest Soil in China.	Zheng X, Liu G, Wang Z, Wang J, Zhang H, Liu B	Curr Microbiol	10.1007/s00284-020-02014-2	2020
Phylogeny	Bacillus praedii sp. nov., isolated from purplish paddy soil.	Liu B, Liu GH, Sengonca C, Schumann P, Wang JP, Zhu YJ, Liu QY, Wang MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002030	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42962	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101002
#43457	Bo Liu, Guo-Hong Liu, Cetin Sengonca, Peter Schumann, Jie-Ping Wang, Yu-Jing Zhu, Qin-Ying Liu, Ming-Kuang Wang: Bacillus praedii sp. nov., isolated from purplish paddy soil. IJSEM 67: 2823 - 2828 2017 ( DOI 10.1099/ijsem.0.002030 , PubMed 28820088 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cytobacillus praedii (DSM 101002, CCTCC AB 2015208, FJAT-25547)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001439605

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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